WRF安装[diffwrf] Error 1 (ignored)

dongysh · 发表于 2014-4-1 10:40:50

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Ubuntu13.10+WRF3.3+netcdf-4.3.1.1+netcdf-fortran-4.2编译时出现[diffwrf] Error 1 (ignored)
刚开始的问题是
make[2]: Entering directory `/home/dongysh/WRFV3/external/io_netcdf'
x=`echo "gfortran -w -ffree-form -ffree-line-length-none -cpp -fconvert=big-endian -frecord-marker=4 " | awk '{print $1}'` ; export x ; \
if [ $x = "gfortran" ] ; then \
         echo removing external declaration of iargc for gfortran ; \
   /lib/cpp -C -P -C -P -traditional -I/home/dongysh/netcdf/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\
      else \
   /lib/cpp -C -P -C -P -traditional -I/home/dongysh/netcdf/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \
      fi
removing external declaration of iargc for gfortran
gfortran -w -ffree-form -ffree-line-length-none -cpp -fconvert=big-endian -frecord-marker=4  -c  -I/home/dongysh/netcdf/include -I../ioapi_share diffwrf.f
diffwrf io_netcdf is being built now.
/home/dongysh/netcdf/lib/libnetcdff.so: undefined reference to `nc_delete_mp'

（中间诸多类似undefined）

/home/dongysh/netcdf/lib/libnetcdff.so: undefined reference to `nc_copy_att'
/home/dongysh/netcdf/lib/libnetcdff.so: undefined reference to `ncsetfill'
collect2: error: ld returned 1 exit status
make[2]: [diffwrf] Error 1 (ignored)
make[2]: Leaving directory `/home/dongysh/WRFV3/external/io_netcdf'

通过分析知道netcdf_gfortran的动态库libnetcdff.so中对这些都未未定义，而这些都在动态库libnetcdf.so中定义，故将/home/dongysh/WRFV3/external/io_netcdf/makefile文件作了修改：
将
      if [ -f $(NETCDFPATH)/lib/libnetcdff.a ] ; then \
         $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) ../../frame/wrf_debug.o ../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) -lnetcdff ;\
改为
      if [ -f $(NETCDFPATH)/lib/libnetcdf.a ] ; then \
         $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) ../../frame/wrf_debug.o ../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) -lnetcdf ;\
debug之后又出现下述问题：

make[2]: Entering directory `/home/dongysh/WRFV3/external/io_netcdf'
x=`echo "gfortran -w -ffree-form -ffree-line-length-none -cpp -fconvert=big-endian -frecord-marker=4 " | awk '{print $1}'` ; export x ; \
if [ $x = "gfortran" ] ; then \
         echo removing external declaration of iargc for gfortran ; \
   /lib/cpp -C -P -C -P -traditional -I/home/dongysh/netcdf/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\
      else \
   /lib/cpp -C -P -C -P -traditional -I/home/dongysh/netcdf/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \
      fi
removing external declaration of iargc for gfortran
gfortran -w -ffree-form -ffree-line-length-none -cpp -fconvert=big-endian -frecord-marker=4  -c  -I/home/dongysh/netcdf/include -I../ioapi_share diffwrf.f
diffwrf io_netcdf is being built now.
wrf_io.o: In function `__ext_ncd_support_routines_MOD_netcdf_err.part.0':
wrf_io.f:(.text+0x2d): undefined reference to `nf_strerror_'
wrf_io.o: In function `__ext_ncd_support_routines_MOD_gettimeindex':
wrf_io.f:(.text+0x70f2): undefined reference to `nf_put_vara_text_'
wrf_io.o: In function `ext_ncd_get_var_td_char_':

(中间诸多类似undefined)

wrf_io.f:(.text+0x396d1): undefined reference to `nf_inq_dimlen_'
wrf_io.o:wrf_io.f:(.text+0x39713): more undefined references to `nf_inq_dimlen_' follow
field_routines.o: In function `ext_ncd_realfieldio_':

(中间诸多类似undefined)

field_routines.f:(.text+0x947): undefined reference to `nf_get_vara_int_'
module_wrfsi_static.o: In function `__wrfsi_static_MOD_open_wrfsi_static':

(中间诸多类似undefined)

module_wrfsi_static.f:(.text+0x7f6): undefined reference to `nf_close_'
collect2: error: ld returned 1 exit status
make[2]: [diffwrf] Error 1 (ignored)
make[2]: Leaving directory `/home/dongysh/WRFV3/external/io_netcdf'

不知是什么原因，该如何解决，请各位帮忙解决一下，谢谢！

另外，WRF运行所需ideal.exe和wrf.exe都可以生成，我想知道diffwrf对WRF的后续运行究竟有什么影响。

andrewsoong · 发表于 2014-4-1 10:47:29

ubuntu run models 最让人头疼了~~~

longlivehj · 发表于 2014-4-1 11:53:59

本帖最后由 longlivehj 于 2014-4-1 11:55 编辑

出错的原因你找到了，但是这样修改makefile是不行的。nc_*在libnetcdf.so中，nf_*在libnetcdff.so中，你那样修改必然会出现undefined reference to nf_*的错误。

现在能确定的就是你的libnetcdf.so似乎没有正确链接。

注意到你用的是4.2以上版本的netcdf，这样的话，c库和fortran库是分开的。你在分别编译后，安装的位置是否相同？为了避免麻烦，可以直接采用低版本的netcdf，比如4.1.2。

linux系统很自由，每个人配置都不一样。最好能贴出configure的结果，以及告知关键库（比如netcdf）的安装位置等信息，便于查错。

dongysh · 发表于 2014-4-1 18:41:33

本帖最后由 dongysh 于 2014-4-1 18:57 编辑

longlivehj 发表于 2014-4-1 11:53
出错的原因你找到了，但是这样修改makefile是不行的。nc_*在libnetcdf.so中，nf_*在libnetcdff.so中，你那 ...

你好！
netcdf编译后安装位置是相同的，贴一下configure和.bashrc，望指导
configure：
#!/bin/sh

# parse argument list

thiscmd=$0

FORTRAN_COMPILER_TIMER=""
opt_level="-f"
print_usage=""
chemistry=""
wrf_core=""
while [ $# -ge 1 ]; do
case $1 in
   -d) opt_level="-d" ;;
   -s) opt_level="-s" ;;
   -f) opt_level="-f" ;;
   -h) print_usage="yes" ;;
   -help) print_usage="yes" ;;
   -os) shift ; WRF_OS=$1 ;;
   -mach) shift ; WRF_MACH=$1 ;;
   -time) shift ; FORTRAN_COMPILER_TIMER=$1 ;;
   chem) WRF_CHEM=1  ;;
   kpp) WRF_KPP=1  ;;
   radardfi) WRF_DFI_RADAR=1  ;;
   wrfda) wrf_core=DA_CORE ;;
   4dvar) wrf_core=4D_DA_CORE ;;
   arw) wrf_core=EM_CORE  ;;
   nmm) wrf_core=NMM_CORE  ;;
   coamps) wrf_core=COAMPS_CORE  ;;
   exp) wrf_core=EXP_CORE  ;;
   titan) WRF_TITAN=1 ; break ;;
   mars) WRF_MARS=1 ; break ;;
   venus) WRF_VENUS=1 ; break ;;
esac
shift
done
if [ -n "$print_usage" ] ; then
  echo usage: $thiscmd '[-d|-s|-f|-os os|-mach mach|-time timecommand] [chem] [kpp]'
  exit
fi

if `pwd | grep ' ' > /dev/null ` ; then
  echo '************************** W A R N I N G ************************************'
  echo The current working directory has spaces in some components of its path name
  echo and this may cause problems for your build.  This can occur, for example, on
  echo Windows systems.  It is strongly recommended that you install WRF and other
  echo related software such as NetCDF in directories whose path names contain no
  echo white space.  On Win, for example, create and install in a directory under C:.
  echo '*****************************************************************************'
fi

# lifted from the configure file for mpich; 00/03/10 jm
#
# Check for perl and perl version
for p in perl5 perl
do
  # Extract the first word of "$p", so it can be a program name with args.
  set dummy $p; ac_word=$2
  if test -z "$ac_echo_n" ; then
ac_echo_n=yes
if (echo "testing\c"; echo 1,2,3) | grep c >/dev/null; then
   # Stardent Vistra SVR4 grep lacks -e, says ghazi@caip.rutgers.edu.
   if (echo -n testing; echo 1,2,3) | sed s/-n/xn/ | grep xn >/dev/null; then
ac_n= ac_c='
' ac_t='       '
   else
      ac_n=-n ac_c= ac_t=
   fi
else
   ac_n= ac_c='\c' ac_t=
fi
ac_echo_test=`echo foo 1>&1`
if test -z "$ac_echo_test" ; then
   print_error "Your sh shell does not handle the output redirection"
   print_error "1>&1 correctly.  Configure will work around this problem,"
   print_error "but you should report the problem to your vendor."
fi
  fi
  if test -z "$ac_echo_test" -a 1 = 1 ; then
echo $ac_n "checking for $ac_word""... $ac_c"
  else
echo $ac_n "checking for $ac_word""... $ac_c" 1>&1
  fi
  ac_prog_where=""
  if test -n "$PERL"; then
ac_pg_PERL="$PERL" # Let the user override the test.
  else
ac_first_char=`expr "$p" : "$.$"`
if test "$ac_first_char" = "/" -a -x "$p" ; then
      ac_pg_PERL="$p"
      ac_prog_where=$p
else
      IFS="${IFS=    }"; ac_save_ifs="$IFS"; IFS="${IFS}:"
      for ac_dir in $PATH; do
      test -z "$ac_dir" && ac_dir=.
      if test -f $ac_dir/$ac_word; then
         ac_pg_PERL="$p"
         ac_prog_where=$ac_dir/$ac_word
         break
      fi
      done
      IFS="$ac_save_ifs"
fi
  fi;PERL="$ac_pg_PERL"
  if test -n "$ac_prog_where" ; then
if test -z "$ac_echo_test" -a 1 = 1 ; then
   echo "$ac_t""found $ac_prog_where ($PERL)"
else
   echo "$ac_t""found $ac_prog_where ($PERL)" 1>&1
fi
PERLFULLPATH=$ac_prog_where
  else
if test -z "$ac_echo_test" -a 1 = 1 ; then
   echo "$ac_t""no"
else
   echo "$ac_t""no" 1>&1
fi
  fi
  test -n "$PERL" && break
done

if test -z "$PERL" ; then
# We have to set this outside of the loop lest the first failure in
# PROGRAM_CHECK set the value (which then terminates the effect of the
# loop, since autoconf macros only set values that are null, they
# don't override them
PERL=""
fi

if test -n "$PERL" ; then
PERL="$PERL"

perlversion=`$PERL -v | grep 'This is perl' | \
   sed -e 's/^.*v[a-z ]*$[0-9]$.*$/\1/'`

# Should do a test first for ch_p4 etc.
if test "$perlversion" -lt 5 ; then
      echo "WRF build requires perl version 5, which configure did not find."
      echo "You can set the environment variable PERL to contain the "
      echo "location of perl version 5."
      echo "Configure believes that $PERL is version $perlversion ."
      PERL=""
fi

fi

# Look for netcdf
if test -z "$NETCDF" ; then
  for p in /usr/local/netcdf
  do
if test -d $p ; then
   NETCDF=$p
   break
fi
  done
fi
if  test -z "$NETCDF"  ; then

  if [ `hostname | cut -c 1-2` = "bs" -o \
   `hostname | cut -c 1-2` = "bd" -o \
   `hostname` = "tempest" -o `hostname` = "ute" ] ; then
echo 'Compiling on an NCAR system with weird paths to NetCDF'
echo 'Setting up a local NetCDF directory with symlinks'
if ( test -d ./netcdf_links ) ; then
   echo 'A directory ./netcdf_links already exists. Continuing.'
else
   mkdir ./netcdf_links
   if [ -z "$OBJECT_MODE" ] ; then
      OBJECT_MODE=32
      export OBJECT_MODE
   fi
   if [ $OBJECT_MODE -ne 64 -a $ `hostname | cut -c 1-2` = "bd" -o `hostname | cut -c 1-2` = "bs" $ ] ; then
      ( cd ./netcdf_links ; ln -s /usr/local/lib32/r4i4 ./lib ; \
                           ln -s /usr/local/include ./include )
   else
      ( cd ./netcdf_links ; ln -s /usr/local/lib64/r4i4 ./lib ; \
                           ln -s /usr/local/include ./include )
   fi
fi
NETCDF=`pwd`/netcdf_links
export NETCDF

  else
bedone=""
if [ -d ./netcdf_links ] ; then
   echo '** There is an existing ./netcdf_links file. Should I use? [y]'
   read resp
   if [ "$resp" = "y" ] ; then
      NETCDF=`pwd`/netcdf_links
      bedone="yes"
   else
      echo 'Removing existing ./netcdf_links directory'
      /bin/rm -fr ./netcdf_links
   fi
else
   echo '** WARNING: No path to NETCDF and environment variable NETCDF not set.'
   echo '** would you like me to try to fix? [y]'
fi
netcdfipath=""
netcdflpath=""
while [ -z "$bedone" ] ; do
   read resp
   if [ "$resp" = "y" -o -z "$resp" ]  ; then
      if [ -d ./netcdf_links ] ; then
      echo 'There is already a ./netcdf_links directory. Okay to use links'
      echo 'in this directory for NetCDF include and lib dirs? [y]'
      read resp
      if [ "$resp" = "y" ] ; then
         NETCDF=`pwd`/netcdf_links
         export NETCDF
         bedone="yes"
         continue
      fi
      fi
      if [ -z "$netcdfipath" ] ; then
      echo 'Enter full path to NetCDF include directory on your system'
      read resp
      if [ ! -d "$resp" ] ; then
         echo "invalid path: $resp. Try again? [y]" ; continue
      fi
      netcdfipath=$resp
      fi
      if  [ -z "$netcdflpath" ] ; then
      echo 'Enter full path to NetCDF library directory on your system'
      read resp
      if [ ! -d "$resp" ] ; then
         echo "invalid path: $resp. Try again? [y]" ; continue
      fi
      netcdflpath=$resp
      fi

      if [ -n "$netcdflpath" -a -n "$netcdfipath" ] ; then
      if [ -d ./netcdf_links ] ; then
         echo 'Existing ./netcdf_links directory. Okay to remove. [y]'
         read resp
         if [ "$resp" = "y" ]  ; then
            /bin/rm -fr ./netcdf_links
         fi
      fi
      mkdir ./netcdf_links
      cd ./netcdf_links
         ln -s "$netcdfipath" include
         ln -s "$netcdflpath" lib
      cd ..
      echo created new ./netcdf_links directory
      /bin/ls -lF ./netcdf_links
      NETCDF=`pwd`/netcdf_links
      export NETCDF
      bedone="yes"
      fi
   else
      bedone="yes"
   fi
done
  fi
fi

if test -z "$PDHF5" ; then
  if [ `hostname | cut -c 1-2` = "bb" -o `hostname | cut -c 1-2` = "bf" -o `hostname | cut -c 1-2` = "bs" -o \
   `hostname` = "dataproc" -o `hostname` = "ute" ] ; then
   if [ -d ~michalak/hdf5pbin ] ; then
      PHDF5=~michalak/hdf5pbin
      export PHDF5
   fi
   if [ "$OBJECT_MODE" -eq 64 ] ; then
         if [ -d ~michalak/hdf5pbin-64 ] ; then
            PHDF5=~michalak/hdf5pbin-64
            export PHDF5
         fi
   fi
  fi
fi

USENETCDFF=""  # see below
if [ -n "$NETCDF" ] ; then
  echo "Will use NETCDF in dir: $NETCDF"
# for 3.6.2 and greater there might be a second library, libnetcdff.a .  Check for this and use
# if available
  if [ -f "$NETCDF/lib/libnetcdff.a" ] ; then
USENETCDFF="-lnetcdff"
  fi
else
  echo "Will configure for use without NetCDF"
fi

if [ -n "$PNETCDF" ] ; then
  echo "Will use PNETCDF in dir: $PNETCDF"
# experimental, so don't tease the user if it is not there
#else
#  echo "Will configure for use without NetCDF"
fi

if [ -n "$PHDF5" ] ; then
  echo "Will use PHDF5 in dir: $PHDF5"
else
  echo "PHDF5 not set in environment. Will configure WRF for use without."
fi

if [ "$wrf_core" = "DA_CORE" ]; then
if [ -n "$WRFPLUS_DIR" ] ; then
   echo "To compile WRFDA without 4DVAR, please remove \$WRFPLUS_DIR from environment. "
   exit
fi
fi

if [ "$wrf_core" = "4D_DA_CORE" ]; then
if [ -n "$WRFPLUS_DIR" ] ; then
   echo "Will use WRFPLUS in dir: $WRFPLUS_DIR"
else
   echo "WRFPLUS_DIR not set in environment. Please compile WRFPLUS and set WRFPLUS_DIR."
   exit
fi
fi
# Users who are cross-compiling can set environment variable
# $WRF_OS to override the value normally obtained from `uname`.
# If $WRF_OS is set, then $WRF_MACH can also be set to override
# the value normally obtained from `uname -m`.  If $WRF_OS is
# set and $WRF_MACH is not set, then $WRF_MACH defaults to "ARCH".
# If $WRF_OS is not set then $WRF_MACH is ignored.
if [ -n "$WRF_OS" ] ; then
  echo "${0}:  WRF operating system set to \"${WRF_OS}\" via environment variable \$WRF_OS"
  os=$WRF_OS
  mach="ARCH"
  if [ -n "$WRF_MACH" ] ; then
echo "${0}:  WRF machine set to \"${WRF_MACH}\" via environment variable \$WRF_MACH"
mach=$WRF_MACH
  fi
else
  # if the uname command exists, give it a shot and see if
  # we can narrow the choices; otherwise, spam 'em
  os="ARCH"
  mach="ARCH"
  type uname > /dev/null
  if [ $? -eq 0 ] ; then
os=`uname`
if [ "$os" = "AIX" -o "$os" = "IRIX" -o "$os" = "IRIX64" -o "$os" = "SunOS" -o "$os" = "HP-UX"  -o "$os" = "Darwin" -o "$os" = "Interix" ] ; then
   mach="ARCH"
else
   xxx=`expr "$os" : '$.........$.*'`
   if [ "$xxx"  = "CYGWIN_NT" ] ; then
      os=$xxx
   fi
   if [ "$os" = "OSF1" -o "$os" = "Linux" -o "$os" = "UNICOS/mp" -o "$os" = "UNIX_System_V" -o  "$os" = "CYGWIN_NT" ] ; then
      mach=`uname -m`
      if [ "$mach" = "ia64" -a -f /etc/sgi-release ] ; then
      mach="Altix"
      fi
   else
      os="ARCH"
      mach="ARCH"
   fi
fi
  fi
fi

# an IBM specific hack to adjust the bmaxstack and bmaxdata options if addressing is 32-bit
if [ "$os" = "AIX" ] ; then
   if [ -z "$OBJECT_MODE" ] ; then
      OBJECT_MODE=32
      export OBJECT_MODE
   fi
   if [ "$OBJECT_MODE" = "32" ] ; then
# the bang means nothing to sh in this context; use to represent spaces (perl will unbang)
      ldflags=-bmaxstack:256000000!-bmaxdata:2048000000
   fi
fi

# compile options that come from the environment, such as chemistry
# the "!" is removed by Config_new.pl
if [ -n "$WRF_MARS" ] ; then
  if [ $WRF_MARS = 1 ] ; then
echo building WRF for Mars
compileflags="${compileflags}!-DPLANET!-DMARS"
echo $compileflags
  fi
fi

if [ -n "$WRF_TITAN" ] ; then
  if [ $WRF_TITAN = 1 ] ; then
echo building WRF for Mars
compileflags="${compileflags}!-DPLANET!-DTITAN"
  fi
fi

if [ -n "$WRF_VENUS" ] ; then
  if [ $WRF_VENUS = 1 ] ; then
echo building WRF for Mars
compileflags="${compileflags}!-DPLANET!-DVENUS"
  fi
fi
if [ -n "$WRF_NMM_CORE" ]; then
  if [ $WRF_NMM_CORE = 1 ]; then
if [ -n "$HWRF" ]; then
   if [ $HWRF = 1 ]; then
      echo building WRF with HWRF option
      compileflags="${compileflags}!-DHWRF=1"
      if [ -n "$HWRFX" ]; then
      if [ $HWRFX = 1 ]; then
         compileflags="${compileflags}!-DHWRFX=1"
      fi
      fi
   fi
fi
  fi
fi
if [ -n "$WRF_DFI_RADAR" ] ; then
  if [ $WRF_DFI_RADAR = 1 ] ; then
echo building WRF with radar dfi option
compileflags="${compileflags}!-DWRF_DFI_RADAR=1"
  fi
fi
if [ -n "$WRF_CHEM" ] ; then
  if [ $WRF_CHEM = 1 ] ; then
echo building WRF with chemistry option
compileflags="${compileflags}!-DWRF_CHEM!-DBUILD_CHEM=1"
if [ -n "$WRF_KPP" ] ; then
   if [ $WRF_KPP = 1 ] ; then
      echo building WRF with KPP chemistry option
      compileflags="${compileflags}!-DWRF_KPP"
   fi
fi
  else
compileflags="${compileflags} "
  fi
else
  compileflags="${compileflags} "
fi

if [ `which timex` ] ; then
  FORTRAN_COMPILER_TIMER=timex
fi

# Found perl, so proceed with configuration
if test -n "$PERL" ; then
srch=`grep -i "^#ARCH.*$os" arch/configure_new.defaults | grep -i "$mach"`
if [ -n "$srch" ] ; then
   $PERL arch/Config_new.pl -dmparallel=$COMMLIB -ompparallel=$OMP -perl=$PERL \
      -netcdf=$NETCDF -pnetcdf=$PNETCDF -phdf5=$PHDF5 -os=$os -mach=$mach -ldflags=$ldflags \
      -compileflags=$compileflags -opt_level=$opt_level -USENETCDFF=$USENETCDFF -time=$FORTRAN_COMPILER_TIMER \
      -wrf_core=$wrf_core
   if test ! -f configure.wrf ; then
   exit 1
   fi
   if [ "$opt_level" = "-d" ] ; then
      sed -e 's/FCOPTIM[    ]*=/& # /' -e '/FCDEBUG[    ]*=/s/#//g' configure.wrf > configure.wrf.edit
      /bin/mv configure.wrf.edit configure.wrf
   fi
else
   WRF_OS=$os ; export WRF_OS
   WRF_MACH=$mach ; export WRF_MACH
   echo '*** Configuration not found in configure_new.defaults; checking configure_old.defaults ***'

   # see if we still have an old setting laying around from v2
   if [ "$opt_level" = "-d" ] ; then
   arch/config_old $opt_level
   else
   arch/config_old
   fi

fi
fi

# new feb 2005.  test whether MPI-2
if test -f configure.wrf ; then
  grep 'DMPARALLEL *= *1' configure.wrf > /dev/null
  if [ $? = 0 ] ; then
echo testing for MPI_Comm_f2c and MPI_Comm_c2f
/bin/rm -f tools/mpi2_test
( make mpi2_test 2> /dev/null ) 1> /dev/null
if test -e tools/mpi2_test.o ; then
   echo "  " MPI_Comm_f2c and MPI_Comm_c2f are supported
   sed '/^DM_CC.*=/s/$/ -DMPI2_SUPPORT/' configure.wrf > xx$$ ; /bin/mv xx$$ configure.wrf
   if [ `hostname | cut -c 1-2` = "be" ] ; then
      sed '/^ARCH_LOCAL.*=/s/$/ -DUSE_MPI_IN_PLACE/' configure.wrf > xx$$ ; /bin/mv xx$$ configure.wrf
   fi
else
   echo "  " MPI_Comm_f2c and MPI_Comm_c2f are not supported
fi
grep 'OMPCPP *= *-D_OPENMP' configure.wrf > /dev/null
if [ $? = 0 ] ; then
   echo testing for MPI_Init_thread
   /bin/rm -f tools/mpi2_thread_test
   ( make mpi2_thread_test 2> /dev/null ) 1> /dev/null
   if test -e tools/mpi2_thread_test.o ; then
      echo "  " MPI_Init_thread is supported
      sed '/^DM_CC.*=/s/$/ -DMPI2_THREAD_SUPPORT/' configure.wrf > xx$$ ; /bin/mv xx$$ configure.wrf
   else
      echo "  " MPI_Init_thread is not supported
   fi
fi
  fi
# new dec 2005.  test what fseek is supported (needed for share/landread.c to work correctly)
  echo testing for fseeko and fseeko64
  /bin/rm -f tools/fseeko_test tools/fseeko64_test
  ( make fseek_test 2> /dev/null ) 1> /dev/null
  if [ "$os" = "Darwin" ] ; then
# fseeko64 does not exist under Darwin fseeko does. Remove the 0 length executable
# file that might get generated anyway, even though the compiler complains about missing reference.
/bin/rm -f tools/fseeko64_test
  fi
  if test -x tools/fseeko64_test ; then
( tools/fseeko64_test 2> /dev/null ) 1> /dev/null
if [ $? = 0 ] ; then
   echo fseeko64 is supported
   sed '/^CC .*=/s/$/ -DFSEEKO64_OK /' configure.wrf > xx$$ ; /bin/mv xx$$ configure.wrf
fi
  else
if test -x tools/fseeko_test ; then
   ( tools/fseeko_test 2> /dev/null ) 1> /dev/null
   if [ $? = 0 ] ; then
      echo fseeko is supported and handles 64 bit offsets
      sed '/^CC .*=/s/$/ -DFSEEKO_OK /' configure.wrf > xx$$ ; /bin/mv xx$$ configure.wrf
   else
      echo neither fseeko64 nor fseeko with 64 bit offsets works, landread will be compiled with fseek
      echo but may not work correctly for very high resolution terrain datasets
   fi
else
   echo neither fseeko64 nor fseeko with 64 bit offsets works, landread will be compiled with fseek
   echo but may not work correctly for very high resolution terrain datasets
fi
  fi
fi

echo "------------------------------------------------------------------------"
sed -e '1,/#### Architecture specific settings ####/d' -e '/^externals/,$d' configure.wrf

echo "------------------------------------------------------------------------"
echo "Settings listed above are written to configure.wrf."
echo "If you wish to change settings, please edit that file."
echo "If you wish to change the default options, edit the file:"
echo "    arch/configure_new.defaults"

if test -n $NETCDF ; then
  grep nf_format_64bit $NETCDF/include/netcdf.inc > /dev/null
  configure_aaaa=$? ; export configure_aaaa
  if [ $configure_aaaa -a -z "$WRFIO_NCD_LARGE_FILE_SUPPORT" ] ; then
echo "NetCDF users note:"
echo " This installation of NetCDF supports large file support.  To enable large file"
echo " support in NetCDF, set the environment variable WRFIO_NCD_LARGE_FILE_SUPPORT"
echo " to 1 and run configure again. Set to any other value to avoid this message."
  fi
fi
echo "  "

if [ "$wrf_core" = "DA_CORE" ]; then
  if [ "`grep '^SFC' configure.wrf | grep -i 'gfortran'`" != "" ]; then
echo "WRFDA using gfortran needs realsize=8"
sed -e '/^PROMOTION.*=/s/#//' configure.wrf > configure.wrf.edit
/bin/mv configure.wrf.edit configure.wrf
  fi
fi

#Checking cross-compiling capability for some particular environment
#on Linux and Mac box

if [ $os = "Linux" -o $os = "Darwin" ]; then

  SFC=`grep '^SFC' configure.wrf | awk '{print $3}'`
  SCC=`grep '^SCC' configure.wrf | awk '{print $3}'`
  CCOMP=`grep '^CCOMP' configure.wrf | awk '{print $3}'`

  SFC="`type $SFC 2>/dev/null | awk '{print $NF}' | sed -e 's/(//g;s/)//g'`"
  SCC="`type $SCC 2>/dev/null | awk '{print $NF}' | sed -e 's/(//g;s/)//g'`"
  CCOMP="`type $CCOMP 2>/dev/null | awk '{print $NF}' | sed -e 's/(//g;s/)//g'`"

  if [ -e $NETCDF/lib/libnetcdf.a -a "$SFC" != "" -a "$SCC" != "" -a "$CCOMP" != "" ]; then

SFC_MULTI_ABI=0
SCC_MULTI_ABI=0
CCOMP_MULTI_ABI=0
CROSS_COMPILING=0

foo=`mktemp foo_$$.XXXXXX`

echo
echo Testing for NetCDF, C and Fortran compiler
echo

cat > ${foo}.c <<EOF
int main(int argc, char ** argv)
{
   return (0);
}
EOF

cat > ${foo}.f <<EOF
      program test_exit
         integer :: STATUS = 0
         call EXIT(STATUS)
      end program test_exit
EOF

ar p $NETCDF/lib/libnetcdf.a > ${foo}.o
netcdf_arch="`file ${foo}.o | grep -o -E '[0-9]{2}-bit|i386'`"
rm ${foo}.o

$SFC -o ${foo} ${foo}.f > /dev/null 2>&1
SFC_arch="`file ${foo} | grep -o -E '[0-9]{2}-bit|i386'`"
rm ${foo} 2> /dev/null

$SCC -o ${foo} ${foo}.c > /dev/null 2>&1
SCC_arch="`file ${foo} | grep -o -E '[0-9]{2}-bit|i386'`"
CCOMP_arch=$SCC_arch
rm ${foo} 2> /dev/null

if [ "$SCC" != "$CCOMP" ]; then
   $CCOMP -o ${foo} ${foo}.c > /dev/null 2>&1
   CCOMP_arch="`file ${foo} | grep -o -E '[0-9]{2}-bit|i386'`"
   rm ${foo} 2> /dev/null
fi

if [ "$SFC_arch" = "" -o "$SCC_arch" = "" -o "$CCOMP_arch" = "" ]; then
   echo "  One of compilers testing failed!"
   echo "  Please check your compiler"
   echo
   rm ${foo}* 2> /dev/null
   exit
else
   cp configure.wrf configure.wrf.edit
fi

case $netcdf_arch in

   32-bit|i386 )

   if [ "$SFC_arch" = "64-bit" ] ; then
      CROSS_COMPILING=1
      $SFC -m32 -o ${foo} ${foo}.f > /dev/null 2>&1
      if [ $? = 0 ]; then
      SFC_MULTI_ABI=1
      sed '/^SFC.*=/s/$/ -m32/' configure.wrf.edit > configure.wrf.tmp
      mv configure.wrf.tmp configure.wrf.edit
      fi
   fi
   if [ "$SCC_arch" = "64-bit" ] ; then
      CROSS_COMPILING=1
      $SCC -m32 -o ${foo} ${foo}.c > /dev/null 2>&1
      if [ $? = 0 ]; then
      SCC_MULTI_ABI=1
      sed '/^SCC.*=/s/$/ -m32/' configure.wrf.edit > configure.wrf.tmp
      mv configure.wrf.tmp  configure.wrf.edit
      fi
   fi

   if [ "$CCOMP_arch" = "64-bit" ] ; then
      CROSS_COMPILING=1
      if [ "$CCOMP" != "$SCC" ]; then
      $CCOMP -m32 -o ${foo} ${foo}.c > /dev/null 2>&1
      if [ $? = 0 ]; then
         CCOMP_MULTI_ABI=1
         sed '/^CCOMP/ s/$/ -m32/' configure.wrf.edit > configure.wrf.tmp
         mv configure.wrf.tmp  configure.wrf.edit
      fi
      else
      CCOMP_MULTI_ABI=1
      sed '/^CCOMP/ s/$/ -m32/' configure.wrf.edit > configure.wrf.tmp
      mv configure.wrf.tmp  configure.wrf.edit
      fi
   fi

   if [ $CROSS_COMPILING -eq 1 ] ; then
      echo NOTE:
      echo This installation NetCDF is 32-bit
      if [ $ $SFC_MULTI_ABI -ne 1 -a "$SFC_arch" = "64-bit" $ \
         -o $ $SCC_MULTI_ABI -ne 1 -a "$SCC_arch" = "64-bit" $ \
         -o $ $CCOMP_MULTI_ABI -ne 1 -a "$CCOMP_arch" = "64-bit" $ ] ; then
         rm configure.wrf.edit
         echo One of compilers is 64-bit and doesn\'t support cross-compiling.
         echo Please check your NETCDF lib and compiler
      else
      echo -m32 is appended to configure.wrf
      echo It will be forced to build in 32-bit.
      echo If you don\'t want 32-bit binaries, please use 64-bit NetCDF, and re-run the configure script.
      fi
   fi
   ;;

   64-bit )

   if [ "$SFC_arch" = "32-bit" -o "$SFC_arch" = "i386" ] ; then
      CROSS_COMPILING=1
      $SFC -m64 -o ${foo} ${foo}.f > /dev/null 2>&1
      if [ $? = 0 ]; then
      SFC_MULTI_ABI=1
      sed '/^SFC.*=/s/$/ -m64/' configure.wrf.edit > configure.wrf.tmp
      mv configure.wrf.tmp configure.wrf.edit
      fi
   fi
   if [ "$SCC_arch" = "32-bit" -o "$SCC_arch" = "i386" ] ; then
      CROSS_COMPILING=1
      $SCC -m64 -o ${foo} ${foo}.c > /dev/null 2>&1
      if [ $? = 0 ]; then
      SCC_MULTI_ABI=1
      sed '/^SCC.*=/s/$/ -m64/' configure.wrf.edit > configure.wrf.tmp
      mv configure.wrf.tmp configure.wrf.edit
      fi
   fi

   if [ "$CCOMP_arch" = "32-bit" -o "$CCOMP_arch" = "i386" ] ; then
      CROSS_COMPILING=1
      if [ "$CCOMP" != "$SCC" ]; then
      $CCOMP -m64 -o ${foo} ${foo}.c > /dev/null 2>&1
      if [ $? = 0 ]; then
         CCOMP_MULTI_ABI=1
         sed '/^CCOMP/ s/$/ -m64/' configure.wrf.edit > configure.wrf.tmp
         mv configure.wrf.tmp  configure.wrf.edit
      fi
      else
      CCOMP_MULTI_ABI=1
      sed '/^CCOMP/ s/$/ -m64/' configure.wrf.edit > configure.wrf.tmp
      mv configure.wrf.tmp  configure.wrf.edit
      fi
   fi

   if [ $CROSS_COMPILING -eq 1 ] ; then
      echo NOTE:
      echo This installation NetCDF is 64-bit
      if [ $ $SFC_MULTI_ABI -ne 1 -a "$SFC_arch" != "64-bit" $ \
         -o $ $SCC_MULTI_ABI -ne 1 -a "$SCC_arch" != "64-bit" $ \
         -o $ $CCOMP_MULTI_ABI -ne 1 -a "CCOMP_arch" != "64-bit" $ ]; then
         rm configure.wrf.edit
         echo One of Compilers is 32-bit and doesn\'t support cross-compiling.
         echo Please check your NetCDF lib and compiler
      else
      echo -m64 is appended to configure.wrf
      echo It will be forced to build in 64-bit.
      echo If you don\'t want 64-bit binaries, please use 32-bit NetCDF, and re-run the configure script.
      fi
   fi
   ;;
esac

if [ -e configure.wrf.edit ]; then
   mv configure.wrf.edit configure.wrf
fi

rm ${foo}* 2> /dev/null

if [ $CROSS_COMPILING -eq 0 ] ; then
   echo This installation NetCDF is $netcdf_arch
   echo C compiler is $SCC_arch
   echo Fortran compiler is $SFC_arch
   echo It will build in $netcdf_arch
fi
echo
  fi
fi
.bashrc
#for netcdf
export NETCDF=/home/dongysh/netcdf
export PATH=.:$NETCDF/bin:$PATH
export LD_LIBRARY_PATH=${NETCDF}/lib:${LD_LIBRARY_PATH}
export LD_RUN_PATH=${NETCDF}/lib:${LD_RUN_PATH}

export WRFIO_NCD_LARGE_FILE_SUPPORT=1

longlivehj · 发表于 2014-4-1 19:29:05

dongysh 发表于 2014-4-1 18:41
你好！
netcdf编译后安装位置是相同的，贴一下configure和.bashrc，望指导
configure：

o(∩∩)o...哈哈，不是configure，是configure.wrf，这个才是configure的结果。贴出来瞅瞅。

dongysh · 发表于 2014-4-1 19:52:09

longlivehj 发表于 2014-4-1 19:29
o(∩∩)o...哈哈，不是configure，是configure.wrf，这个才是configure的结果。贴出来瞅瞅。

晕，刚贴的时候我还纳闷呢，想把三个都贴出来，还是只贴了一个：
# configure.wrf
#
# This file was automatically generated by the configure script in the
# top level directory. You may make changes to the settings in this
# file but be aware they will be overwritten each time you run configure.
# Ordinarily, it is necessary to run configure once, when the code is
# first installed.
#
# To permanently change options, change the settings for your platform
# in the file arch/configure.defaults then rerun configure.
#
SHELL          =    /bin/sh
DEVTOP       =    `pwd`
LIBINCLUDE    =    .
.SUFFIXES: .F .i .o .f90 .c

#### Get core settings from environment (set in compile script)
#### Note to add a core, this has to be added to.

COREDEFS = -DEM_CORE=$(WRF_EM_CORE) \
         -DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 \
   -DCOAMPS_CORE=$(WRF_COAMPS_CORE) \
   -DDA_CORE=$(WRF_DA_CORE) \
         -DEXP_CORE=$(WRF_EXP_CORE)

#### Single location for defining total number of domains.  You need
#### at least 1 + 2*(number of total nests).  For example, 1 coarse
#### grid + three fine grids = 1 + 2(3) = 7, so MAX_DOMAINS=7.

MAX_DOMAINS = 21

#### DM buffer length for the configuration flags.

CONFIG_BUF_LEN = 32768

#### Size of bitmasks (in 4byte integers) of stream masks for WRF I/O

MAX_HISTORY = 25

IWORDSIZE = 4
DWORDSIZE = 8
LWORDSIZE = 4

##############################################################################
#### The settings in this section are defaults that may be overridden by the
#### architecture-specific settings in the next section.
##############################################################################

##############################################################################
#### NOTE:  Do not modify these default values here.  To override these
####       values, make changes after "Architecture specific settings".
##############################################################################

#### Native size (in bytes) of Fortran REAL data type on this architecture ####
#### Note:  to change real wordsize (for example, to promote REALs from
####       4-byte to 8-byte), modify the definition of RWORDSIZE in the
####       section following "Architecture specific settings".  Do not
####       change NATIVE_RWORDSIZE as is it architecture-specific.
NATIVE_RWORDSIZE = 4

#### Default sed command and script for Fortran source files ####
#SED_FTN = sed -f $(WRF_SRC_ROOT_DIR)/arch/standard.sed
SED_FTN = $(WRF_SRC_ROOT_DIR)/tools/standard.exe

# Hack to work around $(PWD) not changing during OSF1 build.
# $(IO_GRIB_SHARE_DIR) is reset during the OSF1 build only.
IO_GRIB_SHARE_DIR =

#### ESMF switches                ####
#### These are set up by Config.pl ####
# switch to use separately installed ESMF library for coupling:  1==true
ESMF_COUPLING    = 0
# select dependences on module_utility.o
ESMF_MOD_DEPENDENCE = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/module_utility.o
# select -I options for external/io_esmf vs. external/esmf_time_f90
ESMF_IO_INC       = -I$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90
# select -I options for separately installed ESMF library, if present
ESMF_MOD_INC       =  $(ESMF_IO_INC)
# select cpp token for external/io_esmf vs. external/esmf_time_f90
ESMF_IO_DEFS       =
# select build target for external/io_esmf vs. external/esmf_time_f90
ESMF_TARGET       = esmf_time

##############################################################################

LIBWRFLIB = libwrflib.a

#### Architecture specific settings ####

# Settings for Linux i486 i586 i686, gfortran compiler with gcc  (dm+sm)
#
DMPARALLEL    =       1
OMPCPP       =       -D_OPENMP
OMP          =       -fopenmp
OMPCC          =       -fopenmp
SFC          =    gfortran
SCC          =    gcc
CCOMP          =    gcc
DM_FC          =    mpif90 -f90=$(SFC)
DM_CC          =    mpicc -cc=$(SCC) -DMPI2_SUPPORT -DMPI2_THREAD_SUPPORT
FC             =       $(DM_FC)
CC             =    $(DM_CC) -DFSEEKO64_OK
LD             =    $(FC)
RWORDSIZE    =    $(NATIVE_RWORDSIZE)
PROMOTION    =    # -fdefault-real-8  # uncomment manually
ARCH_LOCAL    =    -DNONSTANDARD_SYSTEM_SUBR
CFLAGS_LOCAL =    -w -O3 -c -DLANDREAD_STUB
LDFLAGS_LOCAL =
CPLUSPLUSLIB =
ESMF_LDFLAG    =    $(CPLUSPLUSLIB)
FCOPTIM       =    -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops
FCREDUCEDOPT =    $(FCOPTIM)
FCNOOPT       =    -O0
FCDEBUG       =    # -g $(FCNOOPT)
FORMAT_FIXED =    -ffixed-form -cpp
FORMAT_FREE    =    -ffree-form -ffree-line-length-none -cpp
FCSUFFIX       =
BYTESWAPIO    =    -fconvert=big-endian -frecord-marker=4
FCBASEOPTS_NO_G =    -w $(FORMAT_FREE) $(BYTESWAPIO)
FCBASEOPTS    =    $(FCBASEOPTS_NO_G) $(FCDEBUG)
MODULE_SRCH_FLAG =
TRADFLAG       =    -traditional
CPP          =    /lib/cpp -C -P
AR             =    ar
ARFLAGS       =    ru
M4             =    m4 -B 14000
RANLIB       =    ranlib
CC_TOOLS       =    $(SCC)

###########################################################
######################
# POSTAMBLE

FGREP = fgrep -iq

ARCHFLAGS    = $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE) -DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=$(LWORDSIZE) \
                  $(ARCH_LOCAL) \
                  $(DA_ARCHFLAGS) \
                  -DDM_PARALLEL \
                     \
                  -DNETCDF \
                     \
                     \
                  -DGRIB2 \
                     \
                     \
                     \
                     \
                     \
                  -DUSE_ALLOCATABLES \
                  -DGRIB1 \
                  -DINTIO \
                  -DLIMIT_ARGS \
                  -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
                  -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
                  -DMAX_HISTORY=$(MAX_HISTORY) \
      -DNMM_NEST=$(WRF_NMM_NEST)
CFLAGS       = $(CFLAGS_LOCAL) -DDM_PARALLEL  \
                  -DMAX_HISTORY=$(MAX_HISTORY)
FCFLAGS       = $(FCOPTIM) $(FCBASEOPTS)
ESMF_LIB_FLAGS  =
ESMF_IO_LIB    = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
ESMF_IO_LIB_EXT = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
INCLUDE_MODULES = $(MODULE_SRCH_FLAG) \
                  $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
                  -I$(WRF_SRC_ROOT_DIR)/main \
                  -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
                  -I$(WRF_SRC_ROOT_DIR)/external/io_int \
                  -I$(WRF_SRC_ROOT_DIR)/frame \
                  -I$(WRF_SRC_ROOT_DIR)/share \
                  -I$(WRF_SRC_ROOT_DIR)/phys \
                  -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
                  -I$(NETCDFPATH)/include \

REGISTRY       = Registry

LIB_BUNDLED    = \
                  $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5/libfftpack.a \
                  $(WRF_SRC_ROOT_DIR)/external/io_grib1/libio_grib1.a \
                  $(WRF_SRC_ROOT_DIR)/external/io_grib_share/libio_grib_share.a \
                  $(WRF_SRC_ROOT_DIR)/external/io_int/libwrfio_int.a \
                  $(ESMF_IO_LIB) \
                  $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
                  $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
                  $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o

LIB_EXTERNAL = \
                  -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/home/dongysh/netcdf/lib -lnetcdff -lnetcdf -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/home/dongysh/jasper/lib -ljasper

LIB          = $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL)
LDFLAGS       = $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
ENVCOMPDEFS    =
WRF_CHEM = 0
CPPFLAGS       = $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
NETCDFPATH    = /home/dongysh/netcdf
PNETCDFPATH    =

bundled:  wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int esmf_time fftpack
external:  wrfio_nf  wrfio_grib2 $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)

######################
externals: bundled external

gen_comms_serial :
( /bin/rm -f $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c )

module_dm_serial :
( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; cat module_dm_stubs.F >> module_dm.F ; fi )

gen_comms_rsllite :
( if [ ! -e $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ] ; then \
      /bin/cp $(WRF_SRC_ROOT_DIR)/tools/gen_comms_warning $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; \
      cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/gen_comms.c >> $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; fi )

module_dm_rsllite :
( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
      cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )

wrfio_nf :
( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \
      make NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
      CC="$(SCC)" CFLAGS="$(CFLAGS)" \
      FC="$(SFC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_pnf :
( cd $(WRF_SRC_ROOT_DIR)/external/io_pnetcdf ; \
      make NETCDFPATH="$(PNETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP) $(ARCHFLAGS)" \
      FC="$(FC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_grib_share :
( cd $(WRF_SRC_ROOT_DIR)/external/io_grib_share ; \
      make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
      FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)

wrfio_grib1 :
( cd $(WRF_SRC_ROOT_DIR)/external/io_grib1 ; \
      make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
      FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)

wrfio_grib2 :
( cd $(WRF_SRC_ROOT_DIR)/external/io_grib2 ; \
      make CC="$(SCC)" CFLAGS="$(CFLAGS) -I/home/dongysh/jasper/include" RM="$(RM)" RANLIB="$(RANLIB)" \
      CPP="$(CPP)" \
      FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
      FIXED="$(FORMAT_FIXED)" archive)

wrfio_int :
( cd $(WRF_SRC_ROOT_DIR)/external/io_int ; \
      make CC="$(CC)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
      FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" FGREP="$(FGREP)" \
      TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ARCHFLAGS="$(ARCHFLAGS)" all )

esmf_time :
( cd $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 ; \
      make FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \
      CPP="$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

fftpack :
( cd $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 ; \
      make FC="$(SFC)" FFLAGS="$(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

atm_ocn :
( cd $(WRF_SRC_ROOT_DIR)/external/atm_ocn ; \
      make CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
      CPP="$(CPP)" \
      FC="$(DM_FC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
      FIXED="$(FORMAT_FIXED)" )

$(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a :
( cd $(WRF_SRC_ROOT_DIR)/external/RSL_LITE ; make CC="$(CC) $(CFLAGS)" \
      FC="$(FC) $(FCFLAGS) $(PROMOTION) $(BYTESWAPIO)" \
      CPP="$(CPP) -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ;\
      $(RANLIB) $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a )

######################
# Macros, these should be generic for all machines

LN = ln -sf
MAKE = make -i -r
RM = rm -f

# These sub-directory builds are identical across all architectures

wrf_ioapi_includes :
( cd $(WRF_SRC_ROOT_DIR)/external/ioapi_share ; \
      $(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_esmf :
( cd $(WRF_SRC_ROOT_DIR)/external/io_esmf ; \
      make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(ESMF_MOD_INC)" \
      RANLIB="$(RANLIB)" CPP="$(CPP) $(POUND_DEF) " AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

# There is probably no reason to modify these rules

.F.i:
$(RM) $@
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.F > $@
mv $*.i $(DEVTOP)/pick/$*.f90
cp $*.F $(DEVTOP)/pick

.F.o:
$(RM) $@
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
$(SED_FTN) $*.bb | $(CPP) > $*.f90
$(RM) $*.b $*.bb
@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
      echo COMPILING $*.F for 4DVAR ; \
      $(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
      mv $*.f90.tmp $*.f90 ; \
      fi
if $(FGREP) '!$$OMP' $*.f90 ; then \
      if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
   $(FC) -o $@ -c $(FCFLAGS) $(OMP) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
      else \
      if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
   $(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
      fi


.F.f90:
$(RM) $@
$(SED_FTN) $*.F > $*.b
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b  > $@
$(RM) $*.b

.f90.o:
$(RM) $@
$(FC) -o $@ -c $(FCFLAGS) $(PROMOTION) $(FCSUFFIX) $*.f90

setfeenv.o : setfeenv.c
$(RM) $@
$(CCOMP) -o $@ -c $(CFLAGS) $(OMPCC) $*.c

.c.o:
$(RM) $@
$(CC) -o $@ -c $(CFLAGS) $*.c

# A little more adventurous.  Allow full opt on
# mediation_integrate.o \
# shift_domain_em.o \
# solve_em.o  <-- gets a little kick from SOLVE_EM_SPECIAL too, if defined
# mediation_feedback_domain.o : mediation_feedback_domain.F
# mediation_force_domain.o : mediation_force_domain.F
# mediation_interp_domain.o : mediation_interp_domain.F

# compile these without high optimization to speed compile
convert_nmm.o : convert_nmm.F
init_modules_em.o : init_modules_em.F
input_wrf.o : input_wrf.F
module_io.o : module_io.F
module_comm_dm.o : module_comm_dm.F
module_comm_dm_0.o : module_comm_dm_0.F
module_comm_dm_1.o : module_comm_dm_1.F
module_comm_dm_2.o : module_comm_dm_2.F
module_comm_dm_3.o : module_comm_dm_3.F
module_comm_nesting_dm.o : module_comm_nesting_dm.F
module_configure.o : module_configure.F
module_dm.o : module_dm.F
module_domain.o : module_domain.F
module_domain_type.o : module_domain_type.F
module_alloc_space_0.o : module_alloc_space_0.F
module_alloc_space_1.o : module_alloc_space_1.F
module_alloc_space_2.o : module_alloc_space_2.F
module_alloc_space_3.o : module_alloc_space_3.F
module_alloc_space_4.o : module_alloc_space_4.F
module_alloc_space_5.o : module_alloc_space_5.F
module_alloc_space_6.o : module_alloc_space_6.F
module_alloc_space_7.o : module_alloc_space_7.F
module_alloc_space_8.o : module_alloc_space_8.F
module_alloc_space_9.o : module_alloc_space_9.F
module_tiles.o : module_tiles.F
module_fddaobs_rtfdda.o : module_fddaobs_rtfdda.F
module_initialize.o : module_initialize.F
module_physics_init.o : module_physics_init.F
module_initialize_b_wave.o : module_initialize_b_wave.F
module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
module_initialize_real.o : module_initialize_real.F
module_initialize_real.o: module_initialize_real.F
module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
module_integrate.o : module_integrate.F
module_io_mm5.o : module_io_mm5.F
module_io_wrf.o : module_io_wrf.F
module_si_io.o : module_si_io.F
module_state_description.o : module_state_description.F
output_wrf.o : output_wrf.F
solve_interface.o : solve_interface.F
start_domain.o : start_domain.F
start_domain_nmm.o : start_domain_nmm.F
start_em.o : start_em.F
wrf_bdyin.o : wrf_bdyin.F
wrf_bdyout.o : wrf_bdyout.F
wrf_ext_read_field.o : wrf_ext_read_field.F
wrf_ext_write_field.o : wrf_ext_write_field.F
wrf_fddaobs_in.o : wrf_fddaobs_in.F
wrf_histin.o : wrf_histin.F
wrf_histout.o : wrf_histout.F
wrf_inputin.o : wrf_inputin.F
wrf_inputout.o : wrf_inputout.F
wrf_restartin.o : wrf_restartin.F
wrf_restartout.o : wrf_restartout.F
wrf_tsin.o : wrf_tsin.F
nl_get_0_routines.o : nl_get_0_routines.F
nl_get_1_routines.o : nl_get_1_routines.F
nl_set_0_routines.o : nl_set_0_routines.F
nl_set_1_routines.o : nl_set_1_routines.F

convert_nmm.o \
init_modules_em.o \
module_dm.o \
module_fddaobs_rtfdda.o \
module_initialize.o \
module_initialize_b_wave.o \
module_initialize_hill2d_x.o \
module_initialize_quarter_ss.o \
module_initialize_real.o \
module_initialize_squall2d_x.o \
module_initialize_squall2d_y.o \
module_integrate.o \
module_io_mm5.o \
module_io_wrf.o \
module_si_io.o \
module_tiles.o \
output_wrf.o \
solve_interface.o \
start_domain.o \
start_domain_nmm.o \
shift_domain_nmm.o \
start_em.o \
wrf_fddaobs_in.o \
wrf_tsin.o :
$(RM) $@
$(SED_FTN) $*.F > $*.b
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
$(RM) $*.b
@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
      echo COMPILING $*.F for 4DVAR ; \
      $(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
      mv $*.f90.tmp $*.f90 ; \
      fi
if $(FGREP) '!$$OMP' $*.f90 ; then \
      if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
   $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
      else \
      if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
   $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
      fi

#solve_em.o :
# $(RM) $@
# $(SED_FTN) $*.F > $*.b
# $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b  > $*.f90
# $(RM) $*.b
# $(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $(SOLVE_EM_SPECIAL) $(OMP) $*.f90

module_sf_ruclsm.o : module_sf_ruclsm.F

module_sf_ruclsm.o :
$(RM) $@
$(SED_FTN) $*.F > $*.b
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
$(RM) $*.b
if $(FGREP) '!$$OMP' $*.f90 ; then \
      echo COMPILING $*.F WITH OMP ; \
      if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
   $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
      else \
      if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
   $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
      fi

# compile without OMP
input_wrf.o \
module_domain.o \
module_domain_type.o \
module_physics_init.o \
module_io.o \
wrf_bdyin.o \
wrf_bdyout.o \
wrf_ext_read_field.o \
wrf_ext_write_field.o \
wrf_histin.o \
wrf_histout.o \
wrf_inputin.o \
wrf_inputout.o \
wrf_restartin.o \
wrf_restartout.o \
module_state_description.o \
module_alloc_space.o \
module_alloc_space_0.o \
module_alloc_space_1.o \
module_alloc_space_2.o \
module_alloc_space_3.o \
module_alloc_space_4.o \
module_alloc_space_5.o \
module_alloc_space_6.o \
module_alloc_space_7.o \
module_alloc_space_8.o \
module_alloc_space_9.o \
module_comm_dm.o \
module_comm_dm_0.o \
module_comm_dm_1.o \
module_comm_dm_2.o \
module_comm_dm_3.o \
module_comm_nesting_dm.o \
module_configure.o :
$(RM) $@
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
$(SED_FTN) $*.bb | $(CPP) > $*.f90
@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
      echo COMPILING $*.F for 4DVAR ; \
      $(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
      mv $*.f90.tmp $*.f90 ; \
      fi
$(RM) $*.b $*.bb
$(FC) -c $(PROMOTION) $(FCSUFFIX) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $*.f90

longlivehj · 发表于 2014-4-1 20:22:33

大概看了一下，lib部分没有问题。
既然是netcdf的问题，那只能先重新安装netcdf试试看了。建议把版本降低。

另外，看到你选择的是dm+sm，你的系统是ubuntu桌面版吧，那应该就是单机使用，选择serial或者sm就好，dm适合于集群。

dongysh · 发表于 2014-4-1 20:37:14

longlivehj 发表于 2014-4-1 20:22
大概看了一下，lib部分没有问题。
既然是netcdf的问题，那只能先重新安装netcdf试试看了。建议把版本降低 ...

好，降低版本试试。

另外，请教一下要是不降低版本，有没有什么好的解决方法？diffwrf对WRF运行有什么具体的作用么？

longlivehj · 发表于 2014-4-1 21:00:04

本帖最后由 longlivehj 于 2014-4-1 21:01 编辑

dongysh 发表于 2014-4-1 20:37
好，降低版本试试。

另外，请教一下要是不降低版本，有没有什么好的解决方法？diffwrf对WRF运行有什么 ...

既然这个错误被wrf编译过程中忽略，而且最重要的两个exe能够出来，应该对模式运行没有影响。从这个链接来看，diffwrf只是一个小工具罢了。

如果不降低版本，也只能是重新编译并检查netcdf的c库和fortran库。一般只要netcdf安装并配置正确了，后面的wrf编译很容易的。

dongysh · 发表于 2014-4-1 22:18:31

longlivehj 发表于 2014-4-1 21:00
既然这个错误被wrf编译过程中忽略，而且最重要的两个exe能够出来，应该对模式运行没有影响。从这个链接来 ...

ok，多谢指导！

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