WRF compile 时生成不了exe文件

戏的儿子

安装WRF需要的包（pgi,mpich,netcdf,zlib,libpng,jpeg,ncl）都正确安装，环境变量也设置好了，安装WRF时，configure成功，但是compile出现了em_real 和 em_wrf的报错。换了不同的WRF版本依旧是一样的错误。具体错误用红色字体标记了。希望各位大神给点意见。
F-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  module_sfs_nba.f90
0.35user 0.04system 0:00.41elapsed 96%CPU (0avgtext+0avgdata 24816maxresident)k
0inputs+17624outputs (0major+14054minor)pagefaults 0swaps
rm -f module_avgflx_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_avgflx_em.F > module_avgflx_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_avgflx_em.G  > module_avgflx_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_avgflx_em.H > module_avgflx_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe module_avgflx_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_avgflx_em.f90
rm -f module_avgflx_em.G module_avgflx_em.H module_avgflx_em.bb
time mpif90 -o module_avgflx_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  module_avgflx_em.f90
0.14user 0.02system 0:00.18elapsed 93%CPU (0avgtext+0avgdata 25360maxresident)k
0inputs+6816outputs (0major+13622minor)pagefaults 0swaps
rm -f module_after_all_rk_steps.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_after_all_rk_steps.F > module_after_all_rk_steps.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_after_all_rk_steps.G  > module_after_all_rk_steps.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_after_all_rk_steps.H > module_after_all_rk_steps.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe module_after_all_rk_steps.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_after_all_rk_steps.f90
rm -f module_after_all_rk_steps.G module_after_all_rk_steps.H module_after_all_rk_steps.bb
time mpif90 -o module_after_all_rk_steps.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  module_after_all_rk_steps.f90
1.34user 0.06system 0:01.41elapsed 99%CPU (0avgtext+0avgdata 94224maxresident)k
0inputs+31776outputs (0major+19992minor)pagefaults 0swaps
rm -f init_modules_em.o
/home/zhou/WRF-chem/WRFV3/tools/standard.exe init_modules_em.F > init_modules_em.b
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   init_modules_em.b  > init_modules_em.f90
rm -f init_modules_em.b
if fgrep -iq '!$OMP' init_modules_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING init_modules_em.F WITH OMP ; fi ; \
   time mpif90 -c -r4 -i4 -O0 -w -Mfree -byteswapio   -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include    init_modules_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING init_modules_em.F WITHOUT OMP ; fi ; \
   time mpif90 -c -r4 -i4 -O0 -w -Mfree -byteswapio   -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include   init_modules_em.f90 ; \
        fi
real 0m0.060s
user 0m0.036s
sys 0m0.018s
rm -f shift_domain_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" shift_domain_em.F > shift_domain_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   shift_domain_em.G  > shift_domain_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" shift_domain_em.H > shift_domain_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe shift_domain_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > shift_domain_em.f90
rm -f shift_domain_em.G shift_domain_em.H shift_domain_em.bb
time mpif90 -o shift_domain_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  shift_domain_em.f90
3.89user 0.16system 0:04.07elapsed 99%CPU (0avgtext+0avgdata 94640maxresident)k
0inputs+89360outputs (0major+22871minor)pagefaults 0swaps
rm -f couple_or_uncouple_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" couple_or_uncouple_em.F > couple_or_uncouple_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   couple_or_uncouple_em.G  > couple_or_uncouple_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" couple_or_uncouple_em.H > couple_or_uncouple_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe couple_or_uncouple_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > couple_or_uncouple_em.f90
rm -f couple_or_uncouple_em.G couple_or_uncouple_em.H couple_or_uncouple_em.bb
time mpif90 -o couple_or_uncouple_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  couple_or_uncouple_em.f90
1.75user 0.05system 0:01.82elapsed 99%CPU (0avgtext+0avgdata 94384maxresident)k
0inputs+14904outputs (0major+23429minor)pagefaults 0swaps
rm -f nest_init_utils.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" nest_init_utils.F > nest_init_utils.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   nest_init_utils.G  > nest_init_utils.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" nest_init_utils.H > nest_init_utils.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe nest_init_utils.bb | /lib/cpp -P -nostdinc -traditional-cpp > nest_init_utils.f90
rm -f nest_init_utils.G nest_init_utils.H nest_init_utils.bb
time mpif90 -o nest_init_utils.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  nest_init_utils.f90
2.88user 0.07system 0:02.97elapsed 99%CPU (0avgtext+0avgdata 99232maxresident)k
0inputs+18168outputs (0major+23830minor)pagefaults 0swaps
rm -f adapt_timestep_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" adapt_timestep_em.F > adapt_timestep_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   adapt_timestep_em.G  > adapt_timestep_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" adapt_timestep_em.H > adapt_timestep_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe adapt_timestep_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > adapt_timestep_em.f90
rm -f adapt_timestep_em.G adapt_timestep_em.H adapt_timestep_em.bb
time mpif90 -o adapt_timestep_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  adapt_timestep_em.f90
3.76user 0.09system 0:03.86elapsed 99%CPU (0avgtext+0avgdata 100480maxresident)k
0inputs+27664outputs (0major+30476minor)pagefaults 0swaps
rm -f interp_domain_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" interp_domain_em.F > interp_domain_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   interp_domain_em.G  > interp_domain_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" interp_domain_em.H > interp_domain_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe interp_domain_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > interp_domain_em.f90
rm -f interp_domain_em.G interp_domain_em.H interp_domain_em.bb
time mpif90 -o interp_domain_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  interp_domain_em.f90
0.02user 0.02system 0:00.06elapsed 78%CPU (0avgtext+0avgdata 22512maxresident)k
0inputs+232outputs (0major+12390minor)pagefaults 0swaps
rm -f module_diffusion_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_diffusion_em.F > module_diffusion_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_diffusion_em.G  > module_diffusion_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_diffusion_em.H > module_diffusion_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe module_diffusion_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_diffusion_em.f90
rm -f module_diffusion_em.G module_diffusion_em.H module_diffusion_em.bb
time mpif90 -o module_diffusion_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  module_diffusion_em.f90
1.90user 0.09system 0:02.01elapsed 98%CPU (0avgtext+0avgdata 47648maxresident)k
0inputs+54072outputs (0major+17232minor)pagefaults 0swaps
rm -f module_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_em.F > module_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_em.G  > module_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_em.H > module_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe module_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_em.f90
rm -f module_em.G module_em.H module_em.bb
time mpif90 -o module_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  module_em.f90
6.21user 0.14system 0:06.37elapsed 99%CPU (0avgtext+0avgdata 104016maxresident)k
0inputs+40440outputs (0major+38248minor)pagefaults 0swaps
rm -f module_sfs_driver.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_sfs_driver.F > module_sfs_driver.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_sfs_driver.G  > module_sfs_driver.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_sfs_driver.H > module_sfs_driver.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe module_sfs_driver.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_sfs_driver.f90
rm -f module_sfs_driver.G module_sfs_driver.H module_sfs_driver.bb
time mpif90 -o module_sfs_driver.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  module_sfs_driver.f90
1.65user 0.07system 0:01.74elapsed 98%CPU (0avgtext+0avgdata 95376maxresident)k
0inputs+32704outputs (0major+20670minor)pagefaults 0swaps
rm -f start_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" start_em.F > start_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   start_em.G  > start_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" start_em.H > start_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe start_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > start_em.f90
rm -f start_em.G start_em.H start_em.bb
time mpif90 -o start_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  start_em.f90
3.69user 0.17system 0:03.88elapsed 99%CPU (0avgtext+0avgdata 77632maxresident)k
0inputs+119672outputs (0major+20334minor)pagefaults 0swaps
rm -f module_first_rk_step_part1.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_first_rk_step_part1.F > module_first_rk_step_part1.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_first_rk_step_part1.G  > module_first_rk_step_part1.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_first_rk_step_part1.H > module_first_rk_step_part1.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe module_first_rk_step_part1.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_first_rk_step_part1.f90
rm -f module_first_rk_step_part1.G module_first_rk_step_part1.H module_first_rk_step_part1.bb
time mpif90 -o module_first_rk_step_part1.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  module_first_rk_step_part1.f90
11.71user 1.36system 0:13.09elapsed 99%CPU (0avgtext+0avgdata 3978176maxresident)k
0inputs+38160outputs (0major+743711minor)pagefaults 0swaps
rm -f module_first_rk_step_part2.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_first_rk_step_part2.F > module_first_rk_step_part2.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_first_rk_step_part2.G  > module_first_rk_step_part2.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_first_rk_step_part2.H > module_first_rk_step_part2.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe module_first_rk_step_part2.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_first_rk_step_part2.f90
rm -f module_first_rk_step_part2.G module_first_rk_step_part2.H module_first_rk_step_part2.bb
time mpif90 -o module_first_rk_step_part2.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  module_first_rk_step_part2.f90
3.98user 0.29system 0:04.29elapsed 99%CPU (0avgtext+0avgdata 853936maxresident)k
0inputs+38184outputs (0major+162368minor)pagefaults 0swaps
19.50user 2.84system 0:22.37elapsed 99%CPU (0avgtext+0avgdata 8814800maxresident)k
0inputs+54632outputs (0major+1664001minor)pagefaults 0swaps
rm -f solve_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" solve_em.F > solve_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   solve_em.G  > solve_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" solve_em.H > solve_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe solve_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > solve_em.f90
rm -f solve_em.G solve_em.H solve_em.bb
time mpif90 -o solve_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  solve_em.f90
20.27user 4.89system 0:25.18elapsed 99%CPU (0avgtext+0avgdata 12305296maxresident)k
0inputs+32416outputs (0major+2295562minor)pagefaults 0swaps
ar ru ../main/libwrflib.a module_advect_em.o module_diffusion_em.o module_small_step_em.o module_big_step_utilities_em.o module_em.o module_solvedebug_em.o module_bc_em.o module_init_utilities.o module_wps_io_arw.o module_damping_em.o module_polarfft.o module_force_scm.o module_first_rk_step_part1.o module_first_rk_step_part2.o module_avgflx_em.o module_sfs_nba.o module_convtrans_prep.o module_sfs_driver.o module_stoch.o module_after_all_rk_steps.o  init_modules_em.o solve_em.o start_em.o shift_domain_em.o couple_or_uncouple_em.o nest_init_utils.o adapt_timestep_em.o interp_domain_em.o
make[2]: Leaving directory `/home/zhou/WRF-chem/WRFV3/dyn_em'
make[1]: Leaving directory `/home/zhou/WRF-chem/WRFV3'
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include " nmm_core ; fi
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include " exp_core ; fi
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include " wrf_hydro ; fi
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include " SOLVER=em em_wrf )
make[1]: Entering directory `/home/zhou/WRF-chem/WRFV3/main'
rm -f ../main/module_wrf_top.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" ../main/module_wrf_top.F > ../main/module_wrf_top.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   ../main/module_wrf_top.G  > ../main/module_wrf_top.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" ../main/module_wrf_top.H > ../main/module_wrf_top.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe ../main/module_wrf_top.bb | /lib/cpp -P -nostdinc -traditional-cpp > ../main/module_wrf_top.f90
rm -f ../main/module_wrf_top.G ../main/module_wrf_top.H ../main/module_wrf_top.bb
time mpif90 -o ../main/module_wrf_top.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  ../main/module_wrf_top.f90
1.82user 0.11system 0:01.95elapsed 98%CPU (0avgtext+0avgdata 74064maxresident)k
0inputs+64296outputs (0major+18601minor)pagefaults 0swaps
rm -f wrf.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" wrf.F > wrf.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   wrf.G  > wrf.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" wrf.H > wrf.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe wrf.bb | /lib/cpp -P -nostdinc -traditional-cpp > wrf.f90
rm -f wrf.G wrf.H wrf.bb
time mpif90 -o wrf.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  wrf.f90
1.05user 0.04system 0:01.12elapsed 98%CPU (0avgtext+0avgdata 89824maxresident)k
0inputs+12368outputs (0major+19560minor)pagefaults 0swaps
ranlib  libwrflib.a
time mpif90 -o wrf.exe  -O3  -w -Mfree -byteswapio     wrf.o ../main/module_wrf_top.o libwrflib.a /home/zhou/WRF-chem/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/zhou/WRF-chem/WRFV3/external/io_grib1/libio_grib1.a /home/zhou/WRF-chem/WRFV3/external/io_grib_share/libio_grib_share.a /home/zhou/WRF-chem/WRFV3/external/io_int/libwrfio_int.a -L/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90 -lesmf_time /home/zhou/WRF-chem/WRFV3/external/RSL_LITE/librsl_lite.a /home/zhou/WRF-chem/WRFV3/frame/module_internal_header_util.o /home/zhou/WRF-chem/WRFV3/frame/pack_utils.o  -L/home/zhou/WRF-chem/WRFV3/external/io_netcdf -lwrfio_nf -L/home/zhou/opt/netcdf/lib  -lnetcdf     -L/home/zhou/opt/hdf5/lib -lhdf5_fortran -lhdf5 -lm -lz   
/usr/bin/ld: cannot find -lhdf5_fortran
0.14user 0.08system 0:00.25elapsed 90%CPU (0avgtext+0avgdata 211328maxresident)k
8inputs+0outputs (0major+23708minor)pagefaults 0swaps
make[1]: [em_wrf] Error 2 (ignored)
make[1]: Leaving directory `/home/zhou/WRF-chem/WRFV3/main'
( cd run ; /bin/rm -f wrf.exe ; ln -s ../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
   ( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include " SOLVER=em em_wrf_SST_ESMF ) ; \
fi
build started:   Mon Nov 13 20:48:53 CST 2017
build completed: Mon Nov 13 21:01:58 CST 2017
--------------------------------------
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include " SOLVER=em IDEAL_CASE=real em_real )
make[1]: Entering directory `/home/zhou/WRF-chem/WRFV3/main'
rm -f ../dyn_em/module_initialize_real.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" ../dyn_em/module_initialize_real.F > ../dyn_em/module_initialize_real.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   ../dyn_em/module_initialize_real.G  > ../dyn_em/module_initialize_real.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" ../dyn_em/module_initialize_real.H > ../dyn_em/module_initialize_real.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe ../dyn_em/module_initialize_real.bb | /lib/cpp -P -nostdinc -traditional-cpp > ../dyn_em/module_initialize_real.f90
rm -f ../dyn_em/module_initialize_real.G ../dyn_em/module_initialize_real.H ../dyn_em/module_initialize_real.bb
time mpif90 -o ../dyn_em/module_initialize_real.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  ../dyn_em/module_initialize_real.f90
15.32user 0.68system 0:16.08elapsed 99%CPU (0avgtext+0avgdata 1266592maxresident)k
0inputs+236296outputs (0major+167405minor)pagefaults 0swaps
rm -f ndown_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" ndown_em.F > ndown_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   ndown_em.G  > ndown_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" ndown_em.H > ndown_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe ndown_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > ndown_em.f90
rm -f ndown_em.G ndown_em.H ndown_em.bb
time mpif90 -o ndown_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  ndown_em.f90
8.02user 0.37system 0:08.42elapsed 99%CPU (0avgtext+0avgdata 738096maxresident)k
0inputs+43744outputs (0major+180455minor)pagefaults 0swaps
rm -f nup_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" nup_em.F > nup_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   nup_em.G  > nup_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" nup_em.H > nup_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe nup_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > nup_em.f90
rm -f nup_em.G nup_em.H nup_em.bb
time mpif90 -o nup_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  nup_em.f90
3.55user 0.10system 0:03.67elapsed 99%CPU (0avgtext+0avgdata 106432maxresident)k
0inputs+32152outputs (0major+28940minor)pagefaults 0swaps
rm -f tc_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" tc_em.F > tc_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   tc_em.G  > tc_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" tc_em.H > tc_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe tc_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > tc_em.f90
rm -f tc_em.G tc_em.H tc_em.bb
time mpif90 -o tc_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  tc_em.f90
4.79user 0.12system 0:04.94elapsed 99%CPU (0avgtext+0avgdata 104432maxresident)k
0inputs+33976outputs (0major+33984minor)pagefaults 0swaps
rm -f real_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" real_em.F > real_em.G
/lib/cpp -P -nostdinc -I/home/zhou/WRF-chem/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM -DNO_GAMMA_SUPPORT  -DDM_PARALLEL -DNETCDF -DHDF5 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   real_em.G  > real_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" real_em.H > real_em.bb
/home/zhou/WRF-chem/WRFV3/tools/standard.exe real_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > real_em.f90
rm -f real_em.G real_em.H real_em.bb
time mpif90 -o real_em.o -c -O3  -w -Mfree -byteswapio    -I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include  -r4 -i4  real_em.f90
4.94user 0.16system 0:05.13elapsed 99%CPU (0avgtext+0avgdata 314288maxresident)k
0inputs+28888outputs (0major+76453minor)pagefaults 0swaps
ranlib  libwrflib.a
time mpif90 -o ndown.exe  -O3  -w -Mfree -byteswapio     ndown_em.o  ../dyn_em/module_initialize_real.o libwrflib.a /home/zhou/WRF-chem/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/zhou/WRF-chem/WRFV3/external/io_grib1/libio_grib1.a /home/zhou/WRF-chem/WRFV3/external/io_grib_share/libio_grib_share.a /home/zhou/WRF-chem/WRFV3/external/io_int/libwrfio_int.a -L/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90 -lesmf_time /home/zhou/WRF-chem/WRFV3/external/RSL_LITE/librsl_lite.a /home/zhou/WRF-chem/WRFV3/frame/module_internal_header_util.o /home/zhou/WRF-chem/WRFV3/frame/pack_utils.o  -L/home/zhou/WRF-chem/WRFV3/external/io_netcdf -lwrfio_nf -L/home/zhou/opt/netcdf/lib  -lnetcdf     -L/home/zhou/opt/hdf5/lib -lhdf5_fortran -lhdf5 -lm -lz  
/usr/bin/ld: cannot find -lhdf5_fortran
0.10user 0.07system 0:00.19elapsed 90%CPU (0avgtext+0avgdata 213392maxresident)k
0inputs+0outputs (0major+24486minor)pagefaults 0swaps
make[1]: [em_real] Error 2 (ignored)
#TEMPORARILY REMOVED time mpif90 -o nup.exe  -O3  -w -Mfree -byteswapio     nup_em.o  ../dyn_em/module_initialize_real.o libwrflib.a /home/zhou/WRF-chem/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/zhou/WRF-chem/WRFV3/external/io_grib1/libio_grib1.a /home/zhou/WRF-chem/WRFV3/external/io_grib_share/libio_grib_share.a /home/zhou/WRF-chem/WRFV3/external/io_int/libwrfio_int.a -L/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90 -lesmf_time /home/zhou/WRF-chem/WRFV3/external/RSL_LITE/librsl_lite.a /home/zhou/WRF-chem/WRFV3/frame/module_internal_header_util.o /home/zhou/WRF-chem/WRFV3/frame/pack_utils.o  -L/home/zhou/WRF-chem/WRFV3/external/io_netcdf -lwrfio_nf -L/home/zhou/opt/netcdf/lib  -lnetcdf     -L/home/zhou/opt/hdf5/lib -lhdf5_fortran -lhdf5 -lm -lz  
time mpif90 -o tc.exe  -O3  -w -Mfree -byteswapio     tc_em.o  ../dyn_em/module_initialize_real.o libwrflib.a /home/zhou/WRF-chem/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/zhou/WRF-chem/WRFV3/external/io_grib1/libio_grib1.a /home/zhou/WRF-chem/WRFV3/external/io_grib_share/libio_grib_share.a /home/zhou/WRF-chem/WRFV3/external/io_int/libwrfio_int.a -L/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90 -lesmf_time /home/zhou/WRF-chem/WRFV3/external/RSL_LITE/librsl_lite.a /home/zhou/WRF-chem/WRFV3/frame/module_internal_header_util.o /home/zhou/WRF-chem/WRFV3/frame/pack_utils.o  -L/home/zhou/WRF-chem/WRFV3/external/io_netcdf -lwrfio_nf -L/home/zhou/opt/netcdf/lib  -lnetcdf     -L/home/zhou/opt/hdf5/lib -lhdf5_fortran -lhdf5 -lm -lz  
/usr/bin/ld: cannot find -lhdf5_fortran
0.15user 0.08system 0:00.26elapsed 91%CPU (0avgtext+0avgdata 199056maxresident)k
0inputs+0outputs (0major+22540minor)pagefaults 0swaps
make[1]: [em_real] Error 2 (ignored)
time mpif90 -o real.exe  -O3  -w -Mfree -byteswapio     real_em.o ../dyn_em/module_initialize_real.o libwrflib.a /home/zhou/WRF-chem/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/zhou/WRF-chem/WRFV3/external/io_grib1/libio_grib1.a /home/zhou/WRF-chem/WRFV3/external/io_grib_share/libio_grib_share.a /home/zhou/WRF-chem/WRFV3/external/io_int/libwrfio_int.a -L/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90 -lesmf_time /home/zhou/WRF-chem/WRFV3/external/RSL_LITE/librsl_lite.a /home/zhou/WRF-chem/WRFV3/frame/module_internal_header_util.o /home/zhou/WRF-chem/WRFV3/frame/pack_utils.o  -L/home/zhou/WRF-chem/WRFV3/external/io_netcdf -lwrfio_nf -L/home/zhou/opt/netcdf/lib  -lnetcdf     -L/home/zhou/opt/hdf5/lib -lhdf5_fortran -lhdf5 -lm -lz  
/usr/bin/ld: cannot find -lhdf5_fortran
0.12user 0.06system 0:00.21elapsed 88%CPU (0avgtext+0avgdata 199696maxresident)k
0inputs+0outputs (0major+23064minor)pagefaults 0swaps
make[1]: [em_real] Error 2 (ignored)
make[1]: Leaving directory `/home/zhou/WRF-chem/WRFV3/main'
( cd test/em_real ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
   ( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm  -module /home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/esmf_time_f90  -I/home/zhou/WRF-chem/WRFV3/main -I/home/zhou/WRF-chem/WRFV3/external/io_netcdf -I/home/zhou/WRF-chem/WRFV3/external/io_int -I/home/zhou/WRF-chem/WRFV3/frame -I/home/zhou/WRF-chem/WRFV3/share -I/home/zhou/WRF-chem/WRFV3/phys -I/home/zhou/WRF-chem/WRFV3/chem -I/home/zhou/WRF-chem/WRFV3/inc -I/home/zhou/opt/netcdf/include " SOLVER=em IDEAL_CASE=real em_wrf_SST_ESMF ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f wrf_SST_ESMF.exe ; ln -s ../../main/wrf_SST_ESMF.exe . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ; \
               ln -sf ../../run/ETAMPNEW_DATA . ;                      \
               ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ;        \
               ln -sf ../../run/RRTM_DATA . ;                          \
               ln -sf ../../run/RRTMG_LW_DATA . ;                      \
               ln -sf ../../run/RRTMG_SW_DATA . ;                      \
               ln -sf ../../run/CAM_ABS_DATA . ;                       \
               ln -sf ../../run/CAM_AEROPT_DATA . ;                    \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6   . ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B    . ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.A2     . ;   \
               ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ;               \
               ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ;               \
               ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ;               \
               ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ;               \
               ln -sf ../../run/CLM_DRDSDT0_DATA . ;                   \
               ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ;               \
               ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ;               \
               ln -sf ../../run/CLM_KAPPA_DATA . ;                     \
               ln -sf ../../run/CLM_TAU_DATA . ;                       \
               ln -sf ../../run/ozone.formatted . ;                    \
               ln -sf ../../run/ozone_lat.formatted . ;                \
               ln -sf ../../run/ozone_plev.formatted . ;               \
               ln -sf ../../run/aerosol.formatted . ;                  \
               ln -sf ../../run/aerosol_lat.formatted . ;              \
               ln -sf ../../run/aerosol_lon.formatted . ;              \
               ln -sf ../../run/aerosol_plev.formatted . ;             \
               ln -sf ../../run/CCN_ACTIVATE.BIN . ;                   \
               ln -sf ../../run/p3_lookup_table_1.dat . ;              \
               if [ 4 -eq 8 ] ; then                        \
                  ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ;   \
                  ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ;   \
                  ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA         ;   \
                  ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ;   \
                  ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ;   \
               fi ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . ) ; \
   ( cd test/em_esmf_exp ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . ) ; \
fi
( cd test/em_real ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . )
( cd test/em_real ; /bin/rm -f tc.exe ; ln -s ../../main/tc.exe . )
( cd test/em_real ; /bin/rm -f ndown.exe ; ln -s ../../main/ndown.exe . )
#TEMPORARILY REMOVED ( cd test/em_real ; /bin/rm -f nup.exe ; ln -s ../../main/nup.exe . )
( cd test/em_real ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . )
( cd test/em_real ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ;    \
             ln -sf ../../run/ETAMPNEW_DATA . ;                     \
             ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ;       \
             ln -sf ../../run/RRTM_DATA . ;                         \
             ln -sf ../../run/RRTMG_LW_DATA . ;                     \
             ln -sf ../../run/RRTMG_SW_DATA . ;                     \
             ln -sf ../../run/CAM_ABS_DATA . ;                      \
             ln -sf ../../run/CAM_AEROPT_DATA . ;                   \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ;  \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6   . ;  \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ;   \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B    . ;  \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.A2     . ;  \
             ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ;              \
             ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ;              \
             ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ;              \
             ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ;              \
             ln -sf ../../run/CLM_DRDSDT0_DATA . ;                  \
             ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ;              \
             ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ;              \
             ln -sf ../../run/CLM_KAPPA_DATA . ;                    \
             ln -sf ../../run/CLM_TAU_DATA . ;                      \
             ln -sf ../../run/ozone.formatted . ;                   \
             ln -sf ../../run/ozone_lat.formatted . ;               \
             ln -sf ../../run/ozone_plev.formatted . ;              \
             ln -sf ../../run/aerosol.formatted . ;                 \
             ln -sf ../../run/aerosol_lat.formatted . ;             \
             ln -sf ../../run/aerosol_lon.formatted . ;             \
             ln -sf ../../run/aerosol_plev.formatted . ;            \
             ln -sf ../../run/capacity.asc . ;            \
             ln -sf ../../run/coeff_p.asc . ;            \
             ln -sf ../../run/coeff_q.asc . ;            \
             ln -sf ../../run/constants.asc . ;            \
             ln -sf ../../run/masses.asc . ;            \
             ln -sf ../../run/termvels.asc . ;            \
             ln -sf ../../run/kernels.asc_s_0_03_0_9 . ;            \
             ln -sf ../../run/kernels_z.asc . ;            \
             ln -sf ../../run/bulkdens.asc_s_0_03_0_9 . ;            \
             ln -sf ../../run/bulkradii.asc_s_0_03_0_9 . ;            \
             ln -sf ../../run/CCN_ACTIVATE.BIN . ;                   \
             ln -sf ../../run/p3_lookup_table_1.dat . ;                   \
             if [ 4 -eq 8 ] ; then                       \
                ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ;  \
                ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ;   \
                ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA ;          \
                ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ;  \
                ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ;  \
             fi )
( cd test/em_real ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . )
( cd test/em_real ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . )
( cd test/em_real ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . )
( cd test/em_real ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . )
( cd test/em_real ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . )
( cd test/em_real ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . )
( cd test/em_real ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . )
( cd test/em_real ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . )
( cd test/em_real ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . )
( cd test/em_real ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . )
( cd test/em_real ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . )
( cd run ; /bin/rm -f real.exe ; ln -s ../main/real.exe . )
( cd run ; /bin/rm -f tc.exe ; ln -s ../main/tc.exe . )
( cd run ; /bin/rm -f ndown.exe ; ln -s ../main/ndown.exe . )
#TEMPORARILY REMOVED ( cd run ; /bin/rm -f nup.exe ; ln -s ../main/nup.exe . )
( cd run ; if test -f namelist.input ; then \
  /bin/cp -f namelist.input namelist.input.backup.`date +%Y-%m-%d_%H_%M_%S` ; fi ; \
  /bin/rm -f namelist.input ; cp ../test/em_real/namelist.input . )

==========================================================================
build started:   Mon Nov 13 20:48:53 CST 2017
build completed: Mon Nov 13 21:02:38 CST 2017

---> Problems building executables, look for errors in the build log  <---

==========================================================================

[zhou@localhost WRFV3]$

andrewsoong

/usr/bin/ld: cannot find -lhdf5_fortran

兰溪之水

同楼上～

戏的儿子

andrewsoong 发表于 2017-11-11 23:41
/usr/bin/ld: cannot find -lhdf5_fortran

是hdf5安装的不对么？

戏的儿子

戏的儿子 发表于 2017-11-12 11:11
是hdf5安装的不对么？

我查看了一下别人的hdf5/lib,下面没看到lhdf5-fortran