求助，CESM模式相关问题

yiyaya

今天尝试运行CESM2.1.3中的B1850这个模块，当选择f09_g17这一分辨率运行默认的5天时候，提交作业一直在运行，目前已经跑了11个小时，一直没有出结果，而且cesm.log文件也是空的，但是当选择f19_g17这个粗分辨率的时候，几分钟就运行完了，请问有谁遇见类似情况吗？我该如何解决呢？

hsuchueng

看一下f09_g17分辨率的实验的cpl.log文件，看有没有完成初始化？或者再看看atm.log文件看看有没有开始积分？

yiyaya

hsuchueng 发表于 2022-1-8 12:25
看一下f09_g17分辨率的实验的cpl.log文件，看有没有完成初始化？或者再看看atm.log文件看看有没有开始积分 ...

您好，我的run目录下面只有cesm.log文件，里面什么也没有，是个空文件。这个目录下没有其它的log文件了，我的bld目录下面会有****.bldlog.220107-223806.gz文件，是这个吗？

yiyaya

我改如何查看有没有开始积分呢？

hsuchueng

yiyaya 发表于 2022-1-8 12:50
您好，我的run目录下面只有cesm.log文件，里面什么也没有，是个空文件。这个目录下没有其它的log文件了， ...

只有cesm.log那说明你这实验都还没有跑啊，setup, build, submit的过程中没有异常吗？

yiyaya

create  setup  build过程

yiyaya

创建case
[sc93477@ln112%bscc-a3 scripts]$ ./create_newcase --case B1850_f09_g17_1 --res f09_g17 --compset B1850 --mach wxy
Compset longname is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD
Compset specification file is /public1/home/sc93477/xyw/CESM2/cesm2/cime/../cime_config/config_compsets.xml
Compset forcing is 1850
Com forcing is Biogeochemistry intercomponent  with diagnostic CO2
ATM component is CAM cam6 physics:
LND component is clm5.0:BGC (vert. resol. CN and methane) with prognostic crop:
ICE component is Sea ICE (cice) model version 5
OCN component is POP2 EcosystemAbiotic DIC/DIC14
ROF component is MOSART: MOdel for Scale Adaptive River Transport
GLC component is cism2 (default, higher-order, can run in parallel):cism ice evolution turned off (this is the standard configuration unless you're explicitly interested in ice evolution):
WAV component is Wave Watch
ESP component is
Pes     specification file is /public1/home/sc93477/xyw/CESM2/cesm2/cime/../cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 0001-01-01
Compset specific settings: name is RUN_REFDATE and value is 0134-01-01
Compset specific settings: name is RUN_TYPE and value is hybrid
Compset specific settings: name is RUN_REFCASE and value is b.e20.B1850.f09_g17.pi_control.all.299_merge_v3
Compset specific settings: name is RUN_REFDIR and value is cesm2_init
Compset specific settings: name is CLM_NAMELIST_OPTS and value is use_init_interp=.true.  init_interp_method='use_finidat_areas'
Could not find machine match for 'ln112.para.bscc' or 'ln112.para.bscc'
Machine is wxy
Pes setting: grid match    is a%0.9x1.25.+l%0.9x1.25.+oi%gx1
Pes setting: grid          is a%0.9x1.25_l%0.9x1.25_oi%gx1v7_r%r05_g%gland4_w%ww3a_m%gx1v7
Pes setting: compset       is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD
Pes setting: tasks       is {'NTASKS_ATM': -8, 'NTASKS_LND': -4, 'NTASKS_ROF': -4, 'NTASKS_ICE': -4, 'NTASKS_OCN': -1, 'NTASKS_GLC': -8, 'NTASKS_WAV': -8, 'NTASKS_CPL': -8}
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1}
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': -4, 'ROOTPE_OCN': -8, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0}
Pes setting: pstrid      is {}
Pes other settings: {}
Pes comments: none
Compset is: 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD
Grid is: a%0.9x1.25_l%0.9x1.25_oi%gx1v7_r%r05_g%gland4_w%ww3a_m%gx1v7
Components in compset are: ['cam', 'clm', 'cice', 'pop', 'mosart', 'cism', 'ww3', 'sesp', 'drv', 'dart']

This is a CESM scientifically supported compset at this resolution.

No project info available
No charge_account info available, using value from PROJECT
No project info available
cesm model version found: cesm2.1.3-rc.01
Batch_system_type is slurm
job is case.run USER_REQUESTED_WALLTIME None USER_REQUESTED_QUEUE None WALLTIME_FORMAT %H:%M:%S
job is case.st_archive USER_REQUESTED_WALLTIME None USER_REQUESTED_QUEUE None WALLTIME_FORMAT %H:%M:%S
Creating Case directory /public1/home/sc93477/xyw/CESM2/cesm2/cime/scripts/B1850_f09_g17_1
[sc93477@ln112%bscc-a3 scripts]$ cd B1850_f09_g17_1
[sc93477@ln112%bscc-a3 B1850_f09_g17_1]$ ls
archive_metadata       case.qstatus  check_input_data  env_case.xml           env_workflow.xml   preview_run  xmlchange
Buildconf              case.setup    env_archive.xml   env_mach_pes.xml       LockedFiles        README.case  xmlquery
case.build             case.submit   env_batch.xml     env_mach_specific.xml  pelayout           SourceMods
case.cmpgen_namelists  check_case    env_build.xml     env_run.xml            preview_namelists  Tools


setup过程
[sc93477@ln112%bscc-a3 B1850_f09_g17_1]$ ./case.setup
/public1/home/sc93477/xyw/CESM2/cesm2/cime/scripts/B1850_f09_g17_1/env_mach_specific.xml already exists, delete to replace
job is case.run USER_REQUESTED_WALLTIME None USER_REQUESTED_QUEUE None WALLTIME_FORMAT %H:%M:%S
Creating batch scripts
Writing case.run script from input template /public1/home/sc93477/xyw/CESM2/cesm2/cime/config/cesm/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /public1/home/sc93477/xyw/CESM2/cesm2/cime/config/cesm/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run


build过程
[sc93477@ln112%bscc-a3 B1850_f09_g17_1]$ ./case.build --skip-provenance-check
Building case in directory /public1/home/sc93477/xyw/CESM2/cesm2/cime/scripts/B1850_f09_g17_1
sharedlib_only is False
model_only is False
Generating component namelists as part of build
- Prestaging REFCASE (/public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01) to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/run
Copy rpointer /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/rpointer.ocn.ovf
Copy rpointer /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/rpointer.rof
Copy rpointer /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/rpointer.atm
Copy rpointer /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/rpointer.glc
Copy rpointer /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/rpointer.ice
Copy rpointer /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/rpointer.lnd
Copy rpointer /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/rpointer.drv
Copy rpointer /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/rpointer.ocn.restart
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.cpl.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.mosart.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.ww3.r.0134-01-01-00000
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.pop.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.cam.i.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.merge.bf_spin.032.1030.pop.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.clm2.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.pop.ro.0134-01-01-00000
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.cism.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.cice.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/list
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/README
Creating component namelists
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/components/cam//cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /public1/home/sc93477/xyw/CESM2/cesm2/cime/scripts/B1850_f09_g17_1/Buildconf/camconf/atm_in file2 /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/run/atm_in
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/components/clm//cime_config/buildnml
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/components/cice//cime_config/buildnml
     ...buildnml calling cice buildcpp to set build time options
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/components/pop//cime_config/buildnml
     ... buildnml: calling pop buildcpp to set build time options
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/components/mosart//cime_config/buildnml
   Running /public1/home/sc93477/xyw/CESM2/cesm2/components/cism//cime_config/buildnml
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/components/ww3//cime_config/buildnml
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/cime/src/components/stub_comps/sesp/cime_config/buildnml
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/cime/src/drivers/mct/cime_config/buildnml
Finished creating component namelists
Building gptl with output to file /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/gptl.bldlog.220108-174853
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/cime/src/build_scripts/buildlib.gptl
Building mct with output to file /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/mct.bldlog.220108-174853
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/cime/src/build_scripts/buildlib.mct
Building pio with output to file /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/pio.bldlog.220108-174853
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/cime/src/build_scripts/buildlib.pio
Component pio build complete with 5 warnings
Building csm_share with output to file /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/csm_share.bldlog.220108-174853
   Calling /public1/home/sc93477/xyw/CESM2/cesm2/cime/src/build_scripts/buildlib.csm_share
Component csm_share build complete with 20 warnings
         - Building clm4_5/clm5_0 Library
Building lnd with output to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/lnd.bldlog.220108-174853
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.cpl.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.mosart.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.ww3.r.0134-01-01-00000
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.pop.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.cam.i.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.merge.bf_spin.032.1030.pop.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.clm2.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.pop.ro.0134-01-01-00000
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.cism.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3.cice.r.0134-01-01-00000.nc
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/list
Staging file /public1/home/sc93477/xyw/cesm/inputdata/cesm2_init/b.e20.B1850.f09_g17.pi_control.all.299_merge_v3/0134-01-01/READMEComponent lnd build complete with 6 warnings
clm built in 205.663574 seconds
Building atm with output to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/atm.bldlog.220108-174853
Building ice with output to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/ice.bldlog.220108-174853
Building ocn with output to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/ocn.bldlog.220108-174853
Building rof with output to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/rof.bldlog.220108-174853
Building glc with output to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/glc.bldlog.220108-174853
Building wav with output to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/wav.bldlog.220108-174853
Building esp with output to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/esp.bldlog.220108-174853
sesp built in 4.750927 seconds
mosart built in 29.369718 seconds
ww built in 39.250957 seconds
Component ocn build complete with 13 warnings
pop built in 104.025053 seconds
Component glc build complete with 3 warnings
cism built in 201.856001 seconds
Component atm build complete with 14 warnings
cam built in 219.962759 seconds
Component ice build complete with 1 warnings
cice built in 241.252370 seconds
Building cesm with output to /public1/home/sc93477/xyw/cesm/scratch/B1850_f09_g17_1/bld/cesm.bldlog.220108-174853
Time spent not building: 20.846881 sec
Time spent building: 596.570482 sec
MODEL BUILD HAS FINISHED SUCCESSFULLY

hsuchueng

个人感觉这些过程都没问题，那去你那个实验的case目录里面看看CaseStatus文件里面有没有什么有用的信息，一般正常在跑的实验最后几行应该是case.submit success / case.run starting / model execution starting之类的语句。

yiyaya

hsuchueng 发表于 2022-1-8 21:42
个人感觉这些过程都没问题，那去你那个实验的case目录里面看看CaseStatus文件里面有没有什么有用的信息，一 ...

谢谢你的帮助，我修改了NTASKS，NTASKS_PER_INST之后，可以运行了。感谢