按照ubuntu10.04安装wrf的教程，安装时出现了一些问题，请大家帮帮忙？

nyjin

是国家局培训时给的教程，教程挺详细，可是我在按照教程安装时出了一些问题，我用黄色的背景在教程中给标识出来了，请大家帮忙看看怎么解决。谢谢了！(我装系统时建了nyqxt用户)
在ubuntu10.04（64位）安装WRFv3.4.1（单机）.docx (15.14 KB, 下载次数: 23)

2014-8-28 11:01 上传

点击文件名下载附件

nyjin

附近怎么能不设置金钱啊？已经改好了，不明白的地方太多，就把疑问在教程里标注了，都在附件里。谢谢！

andrewsoong

nyjin 发表于 2014-8-28 10:58
附近怎么能不设置金钱啊？

你这是问问题还是干么？

nyjin

andrewsoong 发表于 2014-8-28 11:16
你这是问问题还是干么？

问WRF安装问题啊，怕说不清楚，就把按照教程和不明白的地方都放在教程里标注了。帮忙给看看

andrewsoong

nyjin 发表于 2014-8-28 11:28
问WRF安装问题啊，怕说不清楚，就把按照教程和不明白的地方都放在教程里标注了。帮忙给看看

直接给你贴上吧，别人下载还要浪费金钱~~~

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
本说明适用于在ubuntu（64位）linux系统中安装WRF3.4.1版本，内容包括WRF的安装、运行以及可视化。选取了珠江三角洲从2004年4月5日00时到4月6日00时共24小时的模拟个例。蓝色部分为下载地址或参考网址，红色部分为在终端输入的命令（“$”表示为普通用户权限，“#”表示为超级用户权限，从普通用户升级为超级用户需要在终端输入“sudo su”然后输入密码，从超级用户退回到普通用户需要输入“exit”），橙色部分为在文件中修改的代码，紫色部分为在终端上显示的计算机提示。本说明重在操作，如需了解理论的部分则需要参考WRF的用户手册，下载网址为：
http://www.mmm.ucar.edu/wrf/users/supports/tutorial.html

1、        下载安装文件
wrf的下载网址为:
http://www.mmm.ucar.edu/wrf/users/download/get_sources.html
需要下载的压缩包包括WRFV3.4.1.TAR.gz，WPSV3.4.1.TAR.gz，jasper-1.701.0.tar.gz，libpng-1.2.12.tar.gz，zlib-1.2.3.tar.gz，ARWpost_V3.tar.gz和geog.tar.gz(Geography data)。

2、解压压缩包
$ cd $HOME
$ mkdir WRFv3.4.1(WRF3.4.1主目录)
$ cd WRFv3.4.1
$ tar -zxvf WRFV3.4.1.TAR.gz
$ tar –zxvf WPSV3.4.1.TAR.gz
如此，在WRFv3.4.1下面有两个子目录，即WRFV3和WPS

3 安装gfortran、g++、等必要的软件或工具
# apt-get install gfortran g++ build-essential gcc-multilib rpm openjdk-6-jre-headless m4 ia32-libs tcsh

4 安装intel编译器
安装分为icc安装包和fortran安装包，可到intel官方网站免费下载，激活需要序列号，icc安装包是l_ccompxe_2011.11.339.tgz，ifort安装包是l_fcompxe_2011.11.339.tgz，安装路径为/usr/intel。（序列号对应为本说明提供的安装包）
4.1 安装icc（序列号：N5D5-59XJ7FC2）
# mkdir /usr/INTEL
# cd /usr/INTEL
# tar -zxvf l_ccompxe_2011.11.339.tgz
# cd l_ccompxe_2011.11.339
# ./install.sh (选择安装路径：/usr/intel)
4.2 安装ifort（序列号：NR2M-9D5C5CB5）
# cd /usr/INTEL
# tar -zxvf l_fcompxe_2011.11.339.tgz
# cd l_fcompxe_2011.11.339/
# ./install.sh (已经安装icc，不需要再选择安装路径)
4.3 设置环境变量
在~/.bashrc文件后面添加下面的语句（普通用户权限）：
source /usr/intel/composer_xe_2011_sp1.11.339/bin/compilervars.sh intel64

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我是这样做得对吗？
Cd $home
gedit ~/.bashrc
然后添加 source /usr/intel/composer_xe_2011_sp1.11.339/bin/compilervars.sh intel64
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每次修改.bashrc后需要重新打开终端或者输入“source ~/.bashrc”才能生效
参考网站： http://software.intel.com/en-us/ ... -linux-with-ubuntu/

5、安装netcdf
安装包可到官方网站下载，成功运行的版本为4.0，安装包是netcdf-4.0.tar.gz
下载网址：
ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.0.tar.gz
# source /usr/intel/composer_xe_2011_sp1.11.339/bin/compilervars.sh intel64
# cd /usr
# tar -zxvf netcdf-4.0.tar.gz
# cd /usr/netcdf-4.0
# ./configure CC='icc' CXX='icpc' CFLAGS='-O3 -xHost -ip -no-prec-div -static-intel' CXXFLAGS='-O3 -xHost -ip -no-prec-div -static-intel' F77='ifort' FC='ifort' F90='ifort' FFLAGS='-O3 -xHost -ip -no-prec-div -static-intel' CPP='icc -E' CXXCPP='icpc -E' --prefix=/usr/netcdf
# make
# make install
参考网址：
http://www.intel.com/support/performancetools/sb/CS-027812.htm

6、安装NCARG
安装包下载网址为http://www.earthsystemgrid.org/search?Type=Software，安装包为ncl_ncarg-6.0.0.Linux_Debian_x86_64_gcc445.tar.gz
6.1        解压安装包，重命名文件名为ncarg
6.2 安装附加软件包
# apt-get install libx11-dev xorg-dev
6.3 把ncarg压缩包解压到/usr/ncarg路径下
# mkdir /usr/ncarg
# cd /usr/ncarg
# tar –zxvf ncl_ncarg-6.0.0.Linux_Debian_x86_64_gcc445.tar.gz
6.4 在普通用户主文件夹中创建.hluresfile文件，内容如下（普通用户权限）：
!=========================================
! This is a sample .hluresfile. It should
! go in your home directory.
!
! Comments for ".res" files are preceded by a "!".
! Remember quotations are not used in .res files.

! White background/black foreground, these are the default in V6.1.0
*wkForegroundColor  : (/0.,0.,0./)
*wkBackgroundColor  : (/1.,1.,1./)

! Have a favorite colormap that you use for everything? You can
! make it your default here (note the name is NOT in quotes).
!
! In Version 6.1.0, the default is "ncl_default":
! http://www.ncl.ucar.edu/Document ... s/ncl_default.shtml
!
! For all available color maps, see
! http://www.ncl.ucar.edu/Document ... table_gallery.shtml
*wkColorMap         : BlueWhiteOrangeRed

! Font - this is the default in V6.1.0.
! Use times-roman to get the pre-V6.1.0 default.
*Font           : helvetica

! Function code - this is the default in V6.1.0.
! Use ':' to get the pre-V6.1.0 default.
*TextFuncCode               : ~     

! Make default X11 window larger (the default is 500x500)
*wkWidth                     : 800
*wkHeight                    : 800

! Increase the default (16mb) contour memory.
! The default is 100000000.
! For example, if you have gridded data that
! is larger than 500 x 500, you may need this.
! *wsMaximumSize: 300000000
!==========================================
参考网址：
http://www.ncl.ucar.edu/Document/Graphics/hlures.shtml
http://www.ncl.ucar.edu/Download/install.shtml#CopyHLURESFILE

7、安装lib for wps
为了更好的支持WPS模块（GRIB2格式文件）需要安装三个library，他们是jasper、libpng和zlib,其中安装libpng需要先安装zlib1g-dev
# apt-get install zlib1g-dev
# cd /usr/
有三个安装包：jasper-1.701.0.tar.gz，libpng-1.2.12.tar.gz和zlib-1.2.3.tar.gz，把三个文件解压后，有三个目录：jasper-1.701、libpng-1.2.12和zlib-1.2.3，安装方法如下：
# cd XXXX（此处为其中的三个目录）
# ./configure --prefix=XXXXXXX（此处为安装的位置，jasper为/usr/jasper，libpng为/usr/libpng，zlib为/usr/zlib）
# make
# make install
安装完成

8、设置环境变量(普通用戶权限)
确认在~/.bashrc上添加下面的语句：
# NETCDF
export NETCDF=/usr/netcdf
export PATH=$NETCDF/bin:$PATH
# NCARG
export NCARG_ROOT=/usr/ncarg
export PATH=$NCARG_ROOT/bin:$PATH
export DISPLAY=:0.0
# WRF
export WRF_EM_CORE=1
# JASPER
export JASPER=/usr/jasper
export JASPERLIB=$JASPER/lib
export JASPERINC=$JASPER/include
export PATH=$JASPER/bin:$PATH
ulimit –s unlimited (使WRF使用计算机资源不受限制)
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source ~/.bashrc后提示：bash: ulimit: –s: 无效的数字

这改怎么修改？
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参考网址：
http://forum.wrfforum.com/viewtopic.php?f=6&t=1014

9、编译WRFV3
$ cd WRFV3
$ ./configure
checking for perl5... no
checking for perl... found /usr/bin/perl (perl)
Will use NETCDF in dir: /usr/netcdf
PHDF5 not set in environment. Will configure WRF for use without.


If you REALLY want Grib2 output from WRF, modify the arch/Config_new.pl script.
Right now you are not getting the Jasper lib, from the environment, compiled into WRF.

------------------------------------------------------------------------
Please select from among the following supported platforms.

1. Linux x86_64, PGI compiler with gcc (serial)
2. Linux x86_64, PGI compiler with gcc (smpar)
3. Linux x86_64, PGI compiler with gcc (dmpar)
4. Linux x86_64, PGI compiler with gcc (dm+sm)
5. Linux x86_64, PGI compiler with pgcc, SGI MPT (serial)
6. Linux x86_64, PGI compiler with pgcc, SGI MPT (smpar)
7. Linux x86_64, PGI compiler with pgcc, SGI MPT (dmpar)
8. Linux x86_64, PGI compiler with pgcc, SGI MPT (dm+sm)
9. Linux x86_64, PGI accelerator compiler with gcc (serial)
10. Linux x86_64, PGI accelerator compiler with gcc (smpar)
11. Linux x86_64, PGI accelerator compiler with gcc (dmpar)
12. Linux x86_64, PGI accelerator compiler with gcc (dm+sm)
13. Linux x86_64 i486 i586 i686, ifort compiler with icc (serial)
14. Linux x86_64 i486 i586 i686, ifort compiler with icc (smpar)
15. Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar)
16. Linux x86_64 i486 i586 i686, ifort compiler with icc (dm+sm)
17. Linux x86_64 i486 i586 i686, ifort compiler with icc, SGI MPT (serial)
18. Linux x86_64 i486 i586 i686, ifort compiler with icc, SGI MPT (smpar)
19. Linux x86_64 i486 i586 i686, ifort compiler with icc, SGI MPT (dmpar)
20. Linux x86_64 i486 i586 i686, ifort compiler with icc, SGI MPT (dm+sm)
21. Linux i486 i586 i686 x86_64, PathScale compiler with pathcc (serial)
22. Linux i486 i586 i686 x86_64, PathScale compiler with pathcc (dmpar)
23. x86_64 Linux, gfortran compiler with gcc (serial)
24. x86_64 Linux, gfortran compiler with gcc (smpar)
25. x86_64 Linux, gfortran compiler with gcc (dmpar)
26. x86_64 Linux, gfortran compiler with gcc (dm+sm)
27. Cray XT CLE/Linux x86_64, PGI compiler with gcc (serial)
28. Cray XT CLE/Linux x86_64, PGI compiler with gcc (smpar)
29. Cray XT CLE/Linux x86_64, PGI compiler with gcc (dmpar)
30. Cray XT CLE/Linux x86_64, PGI compiler with gcc (dm+sm)
31. Cray XT CLE/Linux x86_64, Cray CCE compiler with gcc (serial)
32. Cray XT CLE/Linux x86_64, Cray CCE compiler with gcc (smpar)
33. Cray XT CLE/Linux x86_64, Cray CCE compiler with gcc (dmpar)
34. Cray XT CLE/Linux x86_64, Cray CCE compiler with gcc (dm+sm)

Enter selection [1-34] : 13
------------------------------------------------------------------------
Compile for nesting? (0=no nesting, 1=basic, 2=preset moves, 3=vortex following) [default 0]: 0
完成后会生成configure.wrf，无须修改
$ ./compile em_real >& compile.log
结果会在test/em_real、run和main的路径中生成执行文件real.exe和wrf.exe

10、编译WPS
$ cd ../WPS
$ ./configure
Will use NETCDF in dir: /usr/netcdf
Found Jasper environment variables for GRIB2 support...
$JASPERLIB = /usr/jasper/lib
$JASPERINC = /usr/jasper/include
------------------------------------------------------------------------
Please select from among the following supported platforms.

1. Linux x86_64, gfortran (serial)
2. Linux x86_64, gfortran (serial_NO_GRIB2)
3. Linux x86_64, gfortran (dmpar)
4. Linux x86_64, gfortran (dmpar_NO_GRIB2)
5. Linux x86_64, PGI compiler (serial)
6. Linux x86_64, PGI compiler (serial_NO_GRIB2)
7. Linux x86_64, PGI compiler (dmpar)
8. Linux x86_64, PGI compiler (dmpar_NO_GRIB2)
9. Linux x86_64, PGI compiler, SGI MPT (serial)
10. Linux x86_64, PGI compiler, SGI MPT (serial_NO_GRIB2)
11. Linux x86_64, PGI compiler, SGI MPT (dmpar)
12. Linux x86_64, PGI compiler, SGI MPT (dmpar_NO_GRIB2)
13. Linux x86_64, IA64 and Opteron (serial)
14. Linux x86_64, IA64 and Opteron (serial_NO_GRIB2)
15. Linux x86_64, IA64 and Opteron (dmpar)
16. Linux x86_64, IA64 and Opteron (dmpar_NO_GRIB2)
17. Linux x86_64, Intel compiler (serial)
18. Linux x86_64, Intel compiler (serial_NO_GRIB2)
19. Linux x86_64, Intel compiler (dmpar)
20. Linux x86_64, Intel compiler (dmpar_NO_GRIB2)
21. Linux x86_64 g95 compiler (serial)
22. Linux x86_64 g95 compiler (serial_NO_GRIB2)
23. Linux x86_64 g95 compiler (dmpar)
24. Linux x86_64 g95 compiler (dmpar_NO_GRIB2)
25. Cray XT/XE Linux x86_64 (Opteron), PGI compiler 5.2 or higher (serial)
26. Cray XT/XE Linux x86_64 (Opteron), PGI compiler 5.2 or higher (serial_NO_GRIB2)
27. Cray XT/XE Linux x86_64 (Opteron), PGI compiler 5.2 or higher (dmpar)
28. Cray XT/XE Linux x86_64 (Opteron), PGI compiler 5.2 or higher (dmpar_NO_GRIB2)
29. Cray XT/XE Linux x86_64 (Opteron), Cray CCE compiler 7.0 or higher (dmpar)
30. Cray XT/XE Linux x86_64 (Opteron), Cray CCE compiler 7.0 or higher (dmpar_NO_GRIB2)

Enter selection [1-30] : 17

######执行后有这样的提示，有问题吗？＃＃＃＃＃
Configuration successful. To build the WPS, type: compile
------------------------------------------------------------------------

Testing for NetCDF, C and Fortran compiler

This installation NetCDF is 64-bit
C compiler is 64-bit
Fortran compiler is 64-bit

Your Fortran + NETCDF did not run successfully.
Your Fortran + C did not run successfully.

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结果生成configure.wps，需要对其进行修改：
##   Settings for Linux x86_64, Intel compiler    (serial) #
#
COMPRESSION_LIBS    = -L/usr/jasper/lib -ljasper \
                      -L/usr/libpng/lib -lpng \
                      -L/usr/zlib/lib -lz
COMPRESSION_INC     = -I/usr/jasper/include \
                      -I/usr/libpng/include \
                      -I/usr/zlib/include
$ ./compile >& compile.log

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生成了geogrid.exe ,ungirb.exe,metgrid.exe等10个exe文件，还少了两个(plotgrids.exe,)，网上查了说是ncarg没安装好，可是我能执行ncl，请大家看看怎么回事?

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11、运行geogrid.exe
在WPS目录下新建geog文件夹并把geog.tar.gz解压后的文件放到该目录下：
$ tar -zxvf geog.tar.gz（文件较大）
修改namelist.wps文件：
max_dom = 3,
start_date = '2004-04-05_00:00:00','2004-04-05_00:00:00','2004-04-05_00:00:00',
end_date = '2004-04-06_00:00:00','2004-04-06_00:00:00','2004-04-06_00:00:00',
parent_id = 1, 1, 2,
parent_grid_ratio = 1, 3, 3,
i_parent_start = 1, 19, 29,
j_parent_start = 1, 15, 13,
e_we = 65, 91, 124,
e_sn = 49, 61, 97,
geog_data_res = '10m','5m','2m',
dx = 36000,
dy = 36000,
ref_lat = 23.0,
ref_lon = 113.0,
truelat1 = 30.0,
truelat2 = 60.0,
stand_lon = 113.0,
geog_data_path = './geog'
运行geogrid.exe
$ ./geogrid.exe
可以查看设置后网格的嵌套情况：
$ ./util/plotgrids.exe
$ idt gmeta
#####################################
运行geogrid.exe后
nyqxt@nyqxt-desktop:~/WRFV3.4.1/WPS$ ./geogrid.exe
forrtl: severe (24): end-of-file during read, unit 10, file /home/nyqxt/WRFV3.4.1/WPS/namelist.wps, line 37, position 0
Image              PC                Routine            Line        Source            
geogrid.exe        000000000068342A  Unknown               Unknown  Unknown
geogrid.exe        0000000000681F26  Unknown               Unknown  Unknown
geogrid.exe        000000000061E9B0  Unknown               Unknown  Unknown
geogrid.exe        00000000005C0DBE  Unknown               Unknown  Unknown
geogrid.exe        00000000005C02FF  Unknown               Unknown  Unknown
geogrid.exe        00000000005EF957  Unknown               Unknown  Unknown
geogrid.exe        0000000000406D16  Unknown               Unknown  Unknown
geogrid.exe        000000000040547B  Unknown               Unknown  Unknown
geogrid.exe        0000000000403DFC  Unknown               Unknown  Unknown
libc.so.6          00007F31D37E9CAD  Unknown               Unknown  Unknown
geogrid.exe        0000000000403CF9  Unknown               Unknown  Unknown

这是我的namelist.wps：
&share
wrf_core = 'ARW',
max_dom = 1,
start_date = '2009-06-14_06:00:00','2009-06-13_06:00:00',
end_date   = '2009-06-16_06:00:00','2009-06-16_06:00:00',
interval_seconds = 21600
io_form_geogrid = 2,
/
&geogrid
parent_id         =   1,
parent_grid_ratio =   1,  
i_parent_start    =   1,
j_parent_start    =   1,
e_we              =  240,
e_sn              =  240,
geog_data_res     = '5m','2m',
dx = 18000,
dy = 18000,
map_proj = 'mercator',
ref_lat   =  34.80000,
ref_lon   =  113.7000,
truelat1  =  30.0,
truelat2  =  45.0,
stand_lon =  113.7000,
geog_data_path = '/home/nyqxt/WRFV3.4.1/WPS/geog/geog'
/

&ungrib
out_format = 'WPS',
prefix = 'FILE',
/

&metgrid
fg_name = 'FILE',
io_form_metgrid = 2,
/
只有27行怎么提示37行有问题，还有就是 geog_data_path怎么设置，按照上面的做好建个geog目录后，在解压压缩包的好，就会在建一个geog的子目录，该怎么设置才对？
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12、运行ungrib.exe
模式所需要的数据是来自NCEP的fnl每6个小时一次的GRIB1或GRIB2格式的数据文件，下载网址是：
http://rda.ucar.edu/datasets/ds083.2/
下载需要注册。把fnl格点资料放在$HOME/data/fnl的路径下，首先选择处理数据的文件：
$ ln -sf ungrib/Variable_Tables/Vtable.GFS Vtable
$ ./link_grib.csh $HOME/data/fnl/fnl_2004040*
$ ./ungrib.exe

13、运行metgrid.exe
$ ./metgrid.exe

14、运行real.exe和wrf.exe
$ cd ../WRFV3/test/em_real
把WPS的输出文件链接过来
$ ln -sf ../../../WPS/met_em.d0* .
修改namelist.input文件
run_hours = 24,
start_year = 2004, 2004, 2004,
start_month = 04, 04, 04,
start_day = 05, 05, 05,
start_hour = 00, 00, 00,
start_minute = 00, 00, 00,
start_second = 00, 00, 00,
end_year = 2004, 2004, 2004,
end_month = 04, 04, 04,
end_day = 06, 06, 06,
end_hour = 00, 00, 00,
end_minute = 00, 00, 00,
end_second = 00, 00, 00,
history_interval = 60, 60, 60,
max_dom = 3,
e_we = 65, 91, 124,
e_sn = 49, 61, 97,
num_metgrid_soil_levels = 2,
dx = 36000, 12000, 4000,
dy = 36000, 12000, 4000,
i_parent_start = 1, 19, 29,
j_parent_start = 1, 15, 13,
运行real和wrf
$ ./real.exe
$ ./wrf.exe
程序运行成功后会生成netcdf格式的wrfout文件，第一重网格的输出文件时wrfout01，第二重是wrfout02，第三重是wrfout03。

15、可视化
实现wrfout的可视化有很多软件，如grads、MATLAB、NCL和IDL等，其中应用较为普及的是grads。Grads无法直接读取wrfout文件，因此需要ARWpost模块进行转换。
15.1 解压并安装ARWpost
$ cd WRFv3.4.1
$ tar –zxvf ARWpost_V3.tar.gz
$ cd ARWpost
$ ./configure
Please select from among the following supported platforms.

   1.  PC Linux i486 i586 i686 x86_64, PGI compiler       
   2.  PC Linux i486 i586 i686 x86_64, Intel compiler       
   3.  PC Linux i486 i586 i686 x86_64, gfortran compiler

Enter selection [1-3] : 2
------------------------------------------------------------------------
Configuration successful. To build the ARWpost, type: compile
------------------------------------------------------------------------
15.2 修改namelist.ARWpost
start_date = '2004-04-05_00:00:00',
end_date   = '2004-04-06_00:00:00',
interval_seconds = 3600,
input_root_name = '$HOME/WRFv3.4.1/WRFV3/test/em_real/wrfout_d01_2004-04-05_00:00:00'
15.3 运行ARWpost
$ ./ARWpost.exe
运行成功后生成ctl文件和dat文件，grads可以直接画图。

nyjin

andrewsoong 发表于 2014-8-28 11:35
直接给你贴上吧，别人下载还要浪费金钱~~~

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谢谢，原来想把附件内容贴上，可是贴不上。

nyjin

我改为安装wrf3.6.就没有上面得问题了。

加菲猪

你关于ifort和icc的环境变量设置的有问题
应该是
source /usr/intel/composer_xe_2011_sp1.11.339/bin/compilervars.sh intel64
source /usr/intel/composer_xe_2011_sp1.11.339/bin/compilervars.sh ia32
在64位系统中，这两个都要加到环境变量里的

nyjin

加菲猪 发表于 2014-9-1 19:44
你关于ifort和icc的环境变量设置的有问题
应该是
source /usr/intel/composer_xe_2011_sp1.11.339/bin/c ...

谢谢，我去试试。

burf

我也发现一些问题，明明已经装了jasper库但是为什么还是提示Right now you are not getting the Jasper lib, from the environment, compiled into WRF   楼主有没有解决方案？