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刚接触Linux和WRF，所以很多东西都不懂。看了一些参考资料，现在有很多问题都不懂
我是在Windows7上用putty登陆linux
编译netCDF、MPICH2、JasPer、zlib、libpng时，参考其他资料，设置环境变量如下
export CC=gcc
export CXX=g++
export FC=gfortran
export FCFLAGS=-m64
export F77=gfortran
export FFLAGS=-m64
安装都成功了
然后参考另一份资料，在.bashprofile中
PATH=$PATH:$HOME/bin:/data/disk/home/zongyanan/0.library/netcdf/bin:/data/disk/home/zongyanan/0.library/mpich/bin
NETCDF=/data/disk/home/zongyanan/0.library/netcdf
WRFIO_NCD_LARGE_FILE_SUPPORT=1
LD_LIBRARY_PATH=$NETCDF/lib:/data/disk/home/zongyanan/0.library/mpich/lib:$LD_LIBRARY_PATH
export PATH NETCDF WRFIO_NCD_LARGE_FILE_SUPPORT LD_LIBRARY_PATH
在WRF官网上下载最新版 WRFV3.7.1.TAR.gz、WPSV3.7.1.TAR.gz
解压
cd WRFV3
./configure
Please select from among the following Linux x86_64 options:
1. (serial) 2. (smpar) 3. (dmpar) 4. (dm+sm) PGI (pgf90/gcc)
5. (serial) 6. (smpar) 7. (dmpar) 8. (dm+sm) PGI (pgf90/pgcc): SGI MPT
9. (serial) 10. (smpar) 11. (dmpar) 12. (dm+sm) PGI (pgf90/gcc): PGI accelerator
13. (serial) 14. (smpar) 15. (dmpar) 16. (dm+sm) INTEL (ifort/icc)
17. (dm+sm) INTEL (ifort/icc): Xeon Phi (MIC architecture)
18. (serial) 19. (smpar) 20. (dmpar) 21. (dm+sm) INTEL (ifort/icc): Xeon (SNB with AVX mods)
22. (serial) 23. (smpar) 24. (dmpar) 25. (dm+sm) INTEL (ifort/icc): SGI MPT
26. (serial) 27. (smpar) 28. (dmpar) 29. (dm+sm) INTEL (ifort/icc): IBM POE
30. (serial) 31. (dmpar) PATHSCALE (pathf90/pathcc)
32. (serial) 33. (smpar) 34. (dmpar) 35. (dm+sm) GNU (gfortran/gcc)
36. (serial) 37. (smpar) 38. (dmpar) 39. (dm+sm) IBM (xlf90_r/cc_r)
40. (serial) 41. (smpar) 42. (dmpar) 43. (dm+sm) PGI (ftn/gcc): Cray XC CLE
44. (serial) 45. (smpar) 46. (dmpar) 47. (dm+sm) CRAY CCE (ftn/gcc): Cray XE and XC
48. (serial) 49. (smpar) 50. (dmpar) 51. (dm+sm) INTEL (ftn/icc): Cray XC
52. (serial) 53. (smpar) 54. (dmpar) 55. (dm+sm) PGI (pgf90/pgcc)
56. (serial) 57. (smpar) 58. (dmpar) 59. (dm+sm) PGI (pgf90/gcc): -f90=pgf90
60. (serial) 61. (smpar) 62. (dmpar) 63. (dm+sm) PGI (pgf90/pgcc): -f90=pgf90
然后问题来了
我们组里的同学安装netCDF时
设置的环境变量是
#Setting netcdf compilers variables exportCC="/opt/intel/composer_xe_2011_sp1.9.293/bin/intel64/icc" export CXX="/opt/intel/composer_xe_2011_sp1.9.293/bin/intel64/icpc" export FC=ifort export F90=ifort export F77=ifort export PERL=/usr/bin/perl export BIN=Linux2_x86_64ifort
# Setting code generation options export CPPFLAGS="-O2 -DNDEBUG -DpgiFortran" export CFLAGS="-g -O2" export CXXFLAGS="-g -O2" exportFFLAGS='-g -O2 -mp -recursive'
（PS：我用这个变量安装netCDF没有成功，所以我的环境变量是最上面的gcc、gfortran）
所以configure的选项应该是根据自己的电脑，还是根据组里的设置？？？这里有什么要求
我试验了下，选择34,
Enter selection [1-63] : 34
------------------------------------------------------------------------
Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]: 1
Configuration successful!
------------------------------------------------------------------------
testing for MPI_Comm_f2c and MPI_Comm_c2f
MPI_Comm_f2c and MPI_Comm_c2f are not supported
testing for fseeko and fseeko64
fseeko64 is supported
------------------------------------------------------------------------
# Settings for Linux x86_64 ppc64le, gfortran compiler with gcc (dmpar)
#
DESCRIPTION = GNU ($SFC/$SCC)
DMPARALLEL = 1
OMPCPP = # -D_OPENMP
OMP = # -fopenmp
OMPCC = # -fopenmp
SFC = gfortran
SCC = gcc
CCOMP = gcc
DM_FC = mpif90 -f90=$(SFC)
DM_CC = mpicc -cc=$(SCC)
FC = time $(DM_FC)
CC = $(DM_CC) -DFSEEKO64_OK
LD = $(FC)
RWORDSIZE = $(NATIVE_RWORDSIZE)
PROMOTION = #-fdefault-real-8
ARCH_LOCAL = -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM
CFLAGS_LOCAL = -w -O3 -c
LDFLAGS_LOCAL =
CPLUSPLUSLIB =
ESMF_LDFLAG = $(CPLUSPLUSLIB)
FCOPTIM = -O2 -ftree-vectorize -funroll-loops
FCREDUCEDOPT = $(FCOPTIM)
FCNOOPT = -O0
FCDEBUG = # -g $(FCNOOPT) # -ggdb -fbacktrace -fbounds-check -ffpe-trap=invalid,zero,overflow
FORMAT_FIXED = -ffixed-form
FORMAT_FREE = -ffree-form -ffree-line-length-none
FCSUFFIX =
BYTESWAPIO = -fconvert=big-endian -frecord-marker=4
FCBASEOPTS_NO_G = -w $(FORMAT_FREE) $(BYTESWAPIO)
FCBASEOPTS = $(FCBASEOPTS_NO_G) $(FCDEBUG)
MODULE_SRCH_FLAG =
TRADFLAG = -traditional
CPP = /lib/cpp -P
AR = ar
ARFLAGS = ru
M4 = m4 -G
RANLIB = ranlib
CC_TOOLS = $(SCC)
###########################################################
######################
# POSTAMBLE
FGREP = fgrep -iq
ARCHFLAGS = $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE) -DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=$(LWORDSIZE) \
$(ARCH_LOCAL) \
$(DA_ARCHFLAGS) \
-DDM_PARALLEL \
\
-DNETCDF \
\
\
\
\
\
\
\
\
\
-DUSE_ALLOCATABLES \
-DGRIB1 \
-DINTIO \
-DLIMIT_ARGS \
-DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
-DMAX_DOMAINS_F=$(MAX_DOMAINS) \
-DMAX_HISTORY=$(MAX_HISTORY) \
-DNMM_NEST=$(WRF_NMM_NEST)
CFLAGS = $(CFLAGS_LOCAL) -DDM_PARALLEL \
-DMAX_HISTORY=$(MAX_HISTORY) -DNMM_CORE=$(WRF_NMM_CORE)
FCFLAGS = $(FCOPTIM) $(FCBASEOPTS)
ESMF_LIB_FLAGS =
# ESMF 5 -- these are defined in esmf.mk, included above
ESMF_IO_LIB = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
ESMF_IO_LIB_EXT = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
INCLUDE_MODULES = $(MODULE_SRCH_FLAG) \
$(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
-I$(WRF_SRC_ROOT_DIR)/main \
-I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
-I$(WRF_SRC_ROOT_DIR)/external/io_int \
-I$(WRF_SRC_ROOT_DIR)/frame \
-I$(WRF_SRC_ROOT_DIR)/share \
-I$(WRF_SRC_ROOT_DIR)/phys \
-I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
-I$(NETCDFPATH)/include \
REGISTRY = Registry
CC_TOOLS_CFLAGS = -DNMM_CORE=$(WRF_NMM_CORE)
LIB_BUNDLED = \
$(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5/libfftpack.a \
$(WRF_SRC_ROOT_DIR)/external/io_grib1/libio_grib1.a \
$(WRF_SRC_ROOT_DIR)/external/io_grib_share/libio_grib_share.a \
$(WRF_SRC_ROOT_DIR)/external/io_int/libwrfio_int.a \
$(ESMF_IO_LIB) \
$(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
$(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
$(WRF_SRC_ROOT_DIR)/frame/pack_utils.o
LIB_EXTERNAL = \
-L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/data/disk/home/zongyanan/0.library/netcdf/lib -lnetcdff -lnetcdf
LIB = $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL) $(LIB_WRF_HYDRO)
LDFLAGS = $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
ENVCOMPDEFS =
WRF_CHEM = 0
CPPFLAGS = $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
NETCDFPATH = /data/disk/home/zongyanan/0.library/netcdf
PNETCDFPATH =
bundled: io_only
external: io_only $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
io_only: esmf_time wrfio_nf \
wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int fftpack
######################
------------------------------------------------------------------------
Settings listed above are written to configure.wrf.
If you wish to change settings, please edit that file.
If you wish to change the default options, edit the file:
arch/configure_new.defaults
Testing for NetCDF, C and Fortran compiler
This installation of NetCDF is 64-bit
C compiler is 64-bit
Fortran compiler is 64-bit
It will build in 64-bit
************************** W A R N I N G ************************************
There are some Fortran 2003 features in WRF that your compiler does not recognize
The IEEE signaling call has been removed. That may not be enough.
*****************************************************************************
为了解决WARNING，参考网上的资料，修改了configure.wrf
FORMAT_FIXED = -ffixed-form -cpp
FORMAT_FREE = -ffree-form -ffree-line-length-none -cpp
然后./compile em_real
[zongyanan@r0 WRFV3]$ ./compile em_real
None of WRF_EM_CORE, WRF_NMM_CORE,
specified in shell environment....
==============================================================================================
V3.7.1
Compiling: WRF_EM_CORE
WRFIO_NCD_LARGE_FILE_SUPPORT=1
Linux r0 2.6.32-573.3.1.el6.x86_64 #1 SMP Thu Aug 13 22:55:16 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-16)
Copyright (C) 2010 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
==============================================================================================
setting parallel make -j 2
==============================================================================================
The following indicate the compilers selected to build the WRF system
Serial Fortran compiler (mostly for tool generation):
which SFC
/usr/bin/gfortran
Serial C compiler (mostly for tool generation):
which SCC
/usr/bin/gcc
Fortran compiler for the model source code:
which FC
which: no mpif90 in (/usr/local/ImageMagick/bin:/opt/java/jdk1.8.0_25/bin/:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/pgi/linux86-64/9.0-4/bin:/opt/torque-4.2.10/bin:/opt/maui-3.3.1/bin:/data/disk/home/zongyanan/bin:/data/disk/home/zongyanan/0.library/netcdf/bin:/data/disk/home/zongyanan/0.library/mpich/bin)
Will use 'time' to report timing information
C compiler for the model source code:
which CC
which: no mpicc in (/usr/local/ImageMagick/bin:/opt/java/jdk1.8.0_25/bin/:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/pgi/linux86-64/9.0-4/bin:/opt/torque-4.2.10/bin:/opt/maui-3.3.1/bin:/data/disk/home/zongyanan/bin:/data/disk/home/zongyanan/0.library/netcdf/bin:/data/disk/home/zongyanan/0.library/mpich/bin)
make: *** [configcheck] Error 1
啥都没生产
congifure选15，
Enter selection [1-63] : 15
------------------------------------------------------------------------
Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]: 1
Configuration successful!
------------------------------------------------------------------------
testing for MPI_Comm_f2c and MPI_Comm_c2f
MPI_Comm_f2c and MPI_Comm_c2f are not supported
testing for fseeko and fseeko64
neither fseeko64 nor fseeko with 64 bit offsets works, landread will be compiled with fseek
but may not work correctly for very high resolution terrain datasets
------------------------------------------------------------------------
# Settings for Linux x86_64 ppc64le i486 i586 i686, ifort compiler with icc (dmpar)
#
# By default, some files are compiled without optimizations to speed up compilation. Removing
# respective makefile rules in the end of this file will result in longer compilation time, and, possibly
# Out Of Memory messages, but might produce binaries which are substantially faster.
#
# Please visit http://www.intel.com/support/performancetools/sb/cs-028607.htm
# for latest info on how to build WRF with Intel compilers.
#
# If you got Out Of Memory message, there are several options:
# 1. Check your memory limits (ulimit -a), possibly increasing swap partitions size.
# 2. Remove any debugging flags (-g, -check, -traceback).
# 3. Force the problematic file to be compiled with less optimizations (see examples at the
# end of this file), try -no-ip compiler flag.
#
# This configuration is aimed at accuracy. To improve performance (at the expence of accuracy) you might
# consider removing '-fp-model precise' flag from FCBASEOPTS. This enables non value-safe optimizations.
# Another option is to add '-ftz' flag, which flushes denormal results to zero when the application is in
# the gradual underflow mode. It may improve performance if the denormal values are not critical to the
# behavior of your workload. To further improve performance, add suitable vectorization options for your
# processor to FCOPTIM (see ifort manpage).
#
# If you have Intel MPI installed and wish to use instead, make the
# following changes to settings below:
# DM_FC = mpiifort
# DM_CC = mpiicc
# and source bin64/mpivars.sh file from your Intel MPI installation
# before the build.
#
# Suggestions for timing improvements from Craig Mattocks
#
#CFLAGS_LOCAL = -w -O3 -ip -fp-model precise -w -ftz -align all -fno-alias $(FORMAT_FREE) $(BYTESWAPIO) #-xHost -fp-model fast=2 -no-prec-div -no-prec-sqrt -ftz -no-multibyte-chars
#LDFLAGS_LOCAL = -ip -fp-model precise -w -ftz -align all -fno-alias $(FORMAT_FREE) $(BYTESWAPIO) #-xHost -fp-model fast=2 -no-prec-div -no-prec-sqrt -ftz -align all -fno-alias -fno-common
#FCBASEOPTS_NO_G = -w -ip -fp-model precise -w -ftz -align all -fno-alias $(FORMAT_FREE) $(BYTESWAPIO) #-xHost -fp-model fast=2 -no-heap-arrays -no-prec-div -no-prec-sqrt -ftz -align all -fno-alias -fno-common $(FORMAT_FREE) $(BYTESWAPIO)
DESCRIPTION = INTEL ($SFC/$SCC)
DMPARALLEL = 1
OMPCPP = # -D_OPENMP
OMP = # -openmp -fpp -auto
OMPCC = # -openmp -fpp -auto
SFC = ifort
SCC = icc
CCOMP = icc
DM_FC = mpif90 -f90=$(SFC)
DM_CC = mpicc -cc=$(SCC)
FC = time $(DM_FC)
CC = $(DM_CC)
LD = $(FC)
RWORDSIZE = $(NATIVE_RWORDSIZE)
PROMOTION = -real-size `expr 8 \* $(RWORDSIZE)` -i4
ARCH_LOCAL = -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM
CFLAGS_LOCAL = -w -O3 -ip #-xHost -fp-model fast=2 -no-prec-div -no-prec-sqrt -ftz -no-multibyte-chars
LDFLAGS_LOCAL = -ip #-xHost -fp-model fast=2 -no-prec-div -no-prec-sqrt -ftz -align all -fno-alias -fno-common
CPLUSPLUSLIB =
ESMF_LDFLAG = $(CPLUSPLUSLIB)
FCOPTIM = -O3
FCREDUCEDOPT = $(FCOPTIM)
FCNOOPT = -O0 -fno-inline -no-ip
FCDEBUG = # -g $(FCNOOPT) -traceback # -fpe0 -check all -ftrapuv -unroll0 -u
FORMAT_FIXED = -FI
FORMAT_FREE = -FR
FCSUFFIX =
BYTESWAPIO = -convert big_endian
FCBASEOPTS_NO_G = -ip -fp-model precise -w -ftz -align all -fno-alias $(FORMAT_FREE) $(BYTESWAPIO) #-xHost -fp-model fast=2 -no-heap-arrays -no-prec-div -no-prec-sqrt -fno-common
FCBASEOPTS = $(FCBASEOPTS_NO_G) $(FCDEBUG)
MODULE_SRCH_FLAG =
TRADFLAG = -traditional
CPP = /lib/cpp -P
AR = ar
ARFLAGS = ru
M4 = m4
RANLIB = ranlib
CC_TOOLS = $(SCC)
###########################################################
######################
# POSTAMBLE
FGREP = fgrep -iq
ARCHFLAGS = $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE) -DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=$(LWORDSIZE) \
$(ARCH_LOCAL) \
$(DA_ARCHFLAGS) \
-DDM_PARALLEL \
\
-DNETCDF \
\
\
\
\
\
\
\
\
\
-DUSE_ALLOCATABLES \
-DGRIB1 \
-DINTIO \
-DLIMIT_ARGS \
-DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
-DMAX_DOMAINS_F=$(MAX_DOMAINS) \
-DMAX_HISTORY=$(MAX_HISTORY) \
-DNMM_NEST=$(WRF_NMM_NEST)
CFLAGS = $(CFLAGS_LOCAL) -DDM_PARALLEL \
-DMAX_HISTORY=$(MAX_HISTORY) -DNMM_CORE=$(WRF_NMM_CORE)
FCFLAGS = $(FCOPTIM) $(FCBASEOPTS)
ESMF_LIB_FLAGS =
# ESMF 5 -- these are defined in esmf.mk, included above
ESMF_IO_LIB = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
ESMF_IO_LIB_EXT = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
INCLUDE_MODULES = $(MODULE_SRCH_FLAG) \
$(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
-I$(WRF_SRC_ROOT_DIR)/main \
-I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
-I$(WRF_SRC_ROOT_DIR)/external/io_int \
-I$(WRF_SRC_ROOT_DIR)/frame \
-I$(WRF_SRC_ROOT_DIR)/share \
-I$(WRF_SRC_ROOT_DIR)/phys \
-I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
-I$(NETCDFPATH)/include \
REGISTRY = Registry
CC_TOOLS_CFLAGS = -DNMM_CORE=$(WRF_NMM_CORE)
LIB_BUNDLED = \
$(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5/libfftpack.a \
$(WRF_SRC_ROOT_DIR)/external/io_grib1/libio_grib1.a \
$(WRF_SRC_ROOT_DIR)/external/io_grib_share/libio_grib_share.a \
$(WRF_SRC_ROOT_DIR)/external/io_int/libwrfio_int.a \
$(ESMF_IO_LIB) \
$(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
$(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
$(WRF_SRC_ROOT_DIR)/frame/pack_utils.o
LIB_EXTERNAL = \
-L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/data/disk/home/zongyanan/0.library/netcdf/lib -lnetcdff -lnetcdf
LIB = $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL) $(LIB_WRF_HYDRO)
LDFLAGS = $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
ENVCOMPDEFS =
WRF_CHEM = 0
CPPFLAGS = $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
NETCDFPATH = /data/disk/home/zongyanan/0.library/netcdf
PNETCDFPATH =
bundled: io_only
external: io_only $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
io_only: esmf_time wrfio_nf \
wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int fftpack
######################
------------------------------------------------------------------------
Settings listed above are written to configure.wrf.
If you wish to change settings, please edit that file.
If you wish to change the default options, edit the file:
arch/configure_new.defaults
************************** W A R N I N G ************************************
There are some Fortran 2003 features in WRF that your compiler does not recognize
The IEEE signaling call has been removed. That may not be enough.
*****************************************************************************
************************** W A R N I N G ************************************
There are some Fortran 2003 features in WRF that your compiler does not recognize
The routines that utilize ISO_C support have been stubbed out.
That may not be enough.
*****************************************************************************
************************** W A R N I N G ************************************
There are some Fortran 2003 features in WRF that your compiler does not recognize
The standard FLUSH routine has been stubbed out.
That may not be enough.
*****************************************************************************
./compile 也啥都没有
所以……现在懵了
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发表于 2015-10-15 11:46:36
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