求助！！CESM1_2_2移植问题（提交任务后出错）

naturalsd

packard 发表于 2018-4-26 22:25
现在细看确实有些小问题，但不影响大局。

大局是模式跑成功了：（引自楼主）

您好，我遇到的问题跟楼主一样一样的。。这是test1.o142里的内容：

Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
-------------------------------------------------------------------------
CESM BUILDNML SCRIPT STARTING
- To prestage restarts, untar a restart.tar file into /public/home/tianf/cesm_cases/test1/run
infile is /public/home/tianf/cesm1_2_2/scripts/test1/Buildconf/cplconf/cesm_namelist
CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
CESM PRESTAGE SCRIPT STARTING
- Case input data directory, DIN_LOC_ROOT, is /public/home/tianf/inputdata
- Checking the existence of input datasets in DIN_LOC_ROOT
CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
Thu Apr 26 15:51:34 CST 2018 -- CSM EXECUTION BEGINS HERE
Thu Apr 26 15:53:10 CST 2018 -- CSM EXECUTION HAS FINISHED
(seq_mct_drv): ===============       SUCCESSFUL TERMINATION OF CPL7-CCSM ===============
Archiving cesm output to /public/home/tianf/cesm_cases/test1/archive/short_term
Calling the short-term archiving script st_archive.sh

st_archive.sh: start of short-term archiving
mv: cannot stat `/public/home/tianf/cesm_cases/test1/archive/short_term/*': No such file or directory
st_archive.sh: restart files from end of run will be saved,
               interim restart files will be deleted
st_archive.sh: short-term archiving completed successfully
/public/home/tianf/cesm_cases/test1/run/Tools/ccsm_getenv: No such file or directory.
gzip: timing/ccsm_timing_stats.180426-155108: No such file or directory

test1.run里面我跟您说的这个对了一下，看着也是一样的，这个是我的

mpirun -np 4 $EXEROOT/cesm.exe >&! cesm.log.$LID

wait
echo "`date` -- CSM EXECUTION HAS FINISHED"

# -------------------------------------------------------------------------
# Update env variables in case user changed them during run
# -------------------------------------------------------------------------

cd $CASEROOT
source ./Tools/ccsm_getenv

# -------------------------------------------------------------------------
# Check for successful run
# -------------------------------------------------------------------------

set sdate = `date +"%Y-%m-%d %H:%M:%S"`
cd $RUNDIR
set CESMLogFile = `ls -1t cesm.log* | head -1`
if ($CESMLogFile == "") then
  echo "Model did not complete - no cesm.log file present - exiting"
  exit -1
endif
set CPLLogFile = `echo $CESMLogFile | sed -e 's/cesm/cpl/'`
if ($CPLLogFile == "") then
  echo "Model did not complete - no cesm.log file present - exiting"
  exit -1
endif
set CPLLogFile = `echo $CESMLogFile | sed -e 's/cesm/cpl/'`
if ($CPLLogFile == "") then
  echo "Model did not complete - no cpl.log file corresponding to most recent CESM log ($RUNDIR/$CESMLogFile)"
  exit -1
endif
grep 'SUCCESSFUL TERMINATION' $CPLLogFile || echo "Model did not complete - see $RUNDIR/$CESMLogFile" && echo "run FAILED $sdate" >>& $CASEROOT/CaseStatus && exit -1

echo "run SUCCESSFUL $sdate" >>& $CASEROOT/CaseStatus


# -------------------------------------------------------------------------
# Save model output logs
# -------------------------------------------------------------------------

gzip *.$LID
if ($LOGDIR != "") then
  if (! -d $LOGDIR/bld) mkdir -p $LOGDIR/bld || echo " problem in creating $LOGDIR/bld"
  cp -p $RUNDIR/*log.$LID.*   $LOGDIR/      
endif

# -------------------------------------------------------------------------
# Perform short term archiving of output
# -------------------------------------------------------------------------
cd $CASEROOT
if ($DOUT_S == 'TRUE') then
  echo "Archiving cesm output to $DOUT_S_ROOT"
  echo "Calling the short-term archiving script st_archive.sh"
  cd $RUNDIR; $CASETOOLS/st_archive.sh
endif

naturalsd

packard 发表于 2018-4-26 22:25
现在细看确实有些小问题，但不影响大局。

大局是模式跑成功了：（引自楼主）

我在test1.run这个地方加了一行，结果好像没啥问题了

if ($DOUT_S == 'TRUE') then
  echo "Archiving cesm output to $DOUT_S_ROOT"
  echo "Calling the short-term archiving script st_archive.sh"
  cd $RUNDIR; $CASETOOLS/st_archive.sh
endif

cd $CASEROOT  ##加这一行

重新提交作业后，test1.o145中如下：

Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
-------------------------------------------------------------------------
CESM BUILDNML SCRIPT STARTING
- To prestage restarts, untar a restart.tar file into /public/home/tianf/cesm_cases/test1/run
infile is /public/home/tianf/cesm1_2_2/scripts/test1/Buildconf/cplconf/cesm_namelist
CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
CESM PRESTAGE SCRIPT STARTING
- Case input data directory, DIN_LOC_ROOT, is /public/home/tianf/inputdata
- Checking the existence of input datasets in DIN_LOC_ROOT
CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
Fri Apr 27 10:16:40 CST 2018 -- CSM EXECUTION BEGINS HERE
Fri Apr 27 10:18:16 CST 2018 -- CSM EXECUTION HAS FINISHED
(seq_mct_drv): ===============       SUCCESSFUL TERMINATION OF CPL7-CCSM ===============
Archiving cesm output to /public/home/tianf/cesm_cases/test1/archive/short_term
Calling the short-term archiving script st_archive.sh

st_archive.sh: start of short-term archiving
st_archive.sh: restart files from end of run will be saved,
               interim restart files will be deleted
st_archive.sh: short-term archiving completed successfully

packard

naturalsd 发表于 2018-4-27 10:31
我在test1.run这个地方加了一行，结果好像没啥问题了

if ($DOUT_S == 'TRUE') then

好啊，解决了就好。
我没见过这个错误就以为这种事情不常见。
可能cesm还是蛮多bug的吧。

packard

naturalsd 发表于 2018-4-27 10:31
我在test1.run这个地方加了一行，结果好像没啥问题了

if ($DOUT_S == 'TRUE') then

我又看了一下，发现这里确实有bug。
而且是1.2.2才有的bug，本来好好的，非要弄个bug出来。
这个也跟移植无关，朋友在ncar的机器上跑也有同样的错。

如果要未来create_newcase的时候不出问题，可以模仿旧版的
http://www.cesm.ucar.edu/models/ ... /cesm_postrun_setup
修改一下 $CESMROOT/scripts/ccsm_utils/Tools/cesm_postrun_setup
适当的地方加上 cd $CASEROOT

(继续无意义吐槽)
谷歌一下cesm_postrun_setup，基本上所有结果或多或少都提到这个bug
https://bb.cgd.ucar.edu/cesm-122 ... it-not-resubmitting
https://bb.cgd.ucar.edu/fail-resubmit-cesm-cheyenne
这个bug至少在2014年8月已经被发现和解决。但bugfix从来没有更新在他们的cesm release里面
他们也许在集中精力发展cesm2，但cesm2还没出来就不支持cesm1了
但然而cesm2还是没正式出来，然后这种bug很多的版本就存在了4年。
类似的bug在cesm还有很多，实在不吐不快

其实我本人用的是1.1.1，bug已经很多了，没想到1.2.2bug更多

naturalsd

packard 发表于 2018-4-27 12:20
我又看了一下，发现这里确实有bug。
而且是1.2.2才有的bug，本来好好的，非要弄个bug出来。
这个也跟移 ...

是的，这个bug可以在$CESMROOT/scripts/ccsm_utils/Tools/cesm_postrun_setup 加上 cd $CASEROOT解决，但是
st_archive.sh: start of short-term archiving
mv: cannot stat `/public/home/tianf/cesm_cases/test1/archive/short_term/*': No such file or directory
这个问题还存在，看了一下st_archive.sh里面，感觉写的好像也没啥问题，但是不知道为啥就是报这个错。
CESM的bug那么多么？刚开始学习这个模式，惊吓了！

还有，我刚开始接触cesm，很多东西都不懂，请问哪里实际的算例可以看一下。比如，想要跑一个2010年到2016年的case，主要关注大气气溶胶组分方面。刚开始接触这个，有点抓瞎，网上只能看到如何配置模式，没有看到讲实际算例的。非常感谢！

钢筋苏打

修改run文件
if ($DOUT_S == 'TRUE') then
  echo "Archiving cesm output to $DOUT_S_ROOT"
  echo "Calling the short-term archiving script st_archive.sh"
  cd $RUNDIR; $CASETOOLS/st_archive.sh ; cd $CASEROOT
endif

AuderyHan

build-namelist - CCSM inputdata root is not a directory: "/share/home/student2/inputdata_hqc" **
ERROR: cpl.buildnml.csh failed
ERROR: /share/home/student2/cesm1_2_2/mycase5/preview_namelists failed: 25344
请问setup出现这样的问题是为什么呢？
希望得到回答

AuderyHan

build-namelist - CCSM inputdata root is not a directory: "/share/home/student2/inputdata_hqc" **
ERROR: cpl.buildnml.csh failed
ERROR: /share/home/student2/cesm1_2_2/mycase5/preview_namelists failed: 25344
请问setup出现这样的问题是为什么呢？
希望得到回答

libra106

感谢大佬们的解释，遇到了同样的问题

ethanH

我在移植时，运行

1. 
   
2. ./create_newcase -case /cesm/cesm1_2_0/case -mach newmach -compset X -res f19_g16
   

复制代码

的时候，没有报错，也没有输出什么信息，但找不到所创建的案例。该怎么解决？楼主，遇过没？