CMAQ运行cctm中断！急求大神指导！

NUIST_ZZD · 发表于 2018-8-30 21:26:45

我近期刚刚接触WRF-CMAQ，磕磕绊绊一直运行到CCTM的时候，程序会存在很多WARNING，并产生一个NETCDF的报错，最后程序中断。。请各位大神帮忙看一下，到底哪里会有问题

这是log.cctm 的error

>>--->> WARNING in subroutine OPEN3

File not available.

CTM_IRR_3 :.//CCTM_D51a_Linux2_x86_64intel.IRR_3.MGT3KM_WEST_20180626

>>--->> WARNING in subroutine OPEN3

File not available.

Checking header data for file: A_CONC_1

netCDF error number -57

Starting time not on file

S_CGRID :.//CCTM_D51a_Linux2_x86_64intel.CGRID.MGT3KM_WEST_20180626

>>--->> WARNING in subroutine OPEN3

File not available.

这是结尾的中断

Value for CTM_PT3DEMIS: N returning FALSE ==================================================================================== BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES= PID 16957 RUNNING AT blade097= EXIT CODE: 9= CLEANING UP REMAINING PROCESSES= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES===================================================================================APPLICATION TERMINATED WITH THE EXIT STRING: Killed (signal 9)7187.398u 15251.219s 16:44.65 2233.4% 0+0k 6633312+7979592io 2325pf+0wendifenddateThu Aug 30 20:44:10 CST 2018exit

跪求大神解救！谢谢！

Lighting · 发表于 2018-8-30 22:19:22

你最好把整个cctm的log文件贴出来，然后把cctm运行的脚本也贴出来

NUIST_ZZD · 发表于 2018-8-31 15:09:54

log 太长了贴不下，大神们看一下CCTM
#!/bin/csh -f

# ====================== CCTMv5.1 Run Script ======================
# Usage: run.cctm >&! cctm_D51a.log &
#
# To report problems or request help with this script/program:
#          http://www.cmascenter.org
# ===================================================================

#> Source the config.cmaq file to set the run environment
source ./config.cmaq

#> Check that M3DATA is set:
if ( ! -e $M3DATA ) then
echo " $M3DATA path does not exist"
exit 1
endif
echo " "; echo " Input data path, M3DATA set to $M3DATA"; echo " "

set PROC    = mpi #> serial or mpi
set APPL    = D51a
set CFG    = MGT3KM_WEST
set MECH    = cb05tucl_ae6_aq
set EXEC    = CCTM_${APPL}_$EXEC_ID

#> horizontal domain decomposition
if ( $PROC == serial ) then
setenv NPCOL_NPROW "1 1"; set NPROCS = 1 # single processor setting
else
setenv NPCOL_NPROW "23 25"; set NPROCS = 575
endif

#> Set the working directory
set BASE    = $M3HOME/scripts/cctm
set BLD    = ${BASE}/BLD_${APPL}

#cd $BASE; date; cat $BASE/cfg.$CFG; echo " "; set echo
set echo

set day1 = 20180626

foreach day ( $day1 )
#foreach day ( $day3 )

#> timestep run parameters

set STDATE = 2018177    # beginning date
set STTIME = 000000       # beginning GMT time (HHMMSS)
set NSTEPS = 240000       # time duration (HHMMSS) for this run
set TSTEP = 010000       # output time step interval (HHMMSS)
set YEAR  = 2018
set YR = 18
set MONTH = 06
set DAY = 26
set YMD = ${YEAR}${MONTH}${DAY}

# =====================================================================
# CCTM Configuration Options
# =====================================================================

#setenv LOGFILE $BASE/$APPL.log  #> log file name; uncomment to write standard output to a log, otherwise write to screen

setenv GRID_NAME ${CFG}       #> check GRIDDESC file for GRID_NAME options
setenv GRIDDESC ./GRIDDESC.${GRID_NAME}  #> grid description file

#setenv CONC_SPCS "O3 NO ANO3I ANO3J NO2 FORM ISOP ANH4J ASO4I ASO4J" #> CONC file species; comment or set to "ALL" to write all species to CONC
#setenv CONC_BLEV_ELEV " 1 4" #> CONC file layer range; comment to write all layers to CONC

setenv AVG_CONC_SPCS "ALL" #> ACONC file species; comment or set to "ALL" to write all species to ACONC
setenv ACONC_BLEV_ELEV "1 10"  #> ACONC file layer range; comment to write all layers to ACONC
#setenv ACONC_END_TIME Y #> override default beginning ACON timestamp [ default: N ]

setenv EXECUTION_ID $EXEC #> define the model execution id

#> Sychronization Time Step Options
setenv CTM_MAXSYNC 360    #> max sync time step (sec) [ default: 720 ]
setenv CTM_MINSYNC  60    #> min sync time step (sec) [ default: 60 ]
setenv SIGMA_SYNC_TOP 0.7 #> top sigma level thru which sync step determined [ default: 0.7 ]

#> Science Options
setenv CTM_WB_DUST N       #> use inline windblown dust emissions [ default: Y ]
setenv CTM_ERODE_AGLAND Y #> use agricultural activity for windblown dust [ default: N ]; ignore if CTM_WB_DUST = N
setenv CTM_WBDUST_BELD BELD3 #> landuse database for identifying dust source regions [ default: BELD3 ]; ignore if CTM_WB_DUST = N
setenv CTM_LTNG_NO N       #> turn on lightning NOx [ default: N ]
setenv CTM_WVEL Y          #> save derived vertical velocity component to conc file [ default: N ]
setenv KZMIN Y             #> use Min Kz option in edyintb [ default: Y ], otherwise revert to Kz0UT
setenv CTM_ILDEPV Y       #> calculate in-line deposition velocities [ default: Y ]
setenv CTM_MOSAIC N       #> landuse specific deposition velocities [ default: N ]
setenv CTM_ABFLUX N       #> Ammonia bi-directional flux for in-line deposition velocities [ default: N ]; ignore if CTM_ILDEPV = N
setenv CTM_HGBIDI Y       #> Mercury bi-directional flux for in-line deposition velocities [ default: N ]; ignore if CTM_ILDEPV = N
setenv CTM_SFC_HONO Y       #> Surface HONO interaction [ default: Y ]; ignore if CTM_ILDEPV = N
setenv CTM_BIOGEMIS N       #> calculate in-line biogenic emissions [ default: N ]
setenv CTM_PT3DEMIS N       #> calculate in-line plume rise for elevated point emissions [ default: N ]

#> I/O Controls
setenv IOAPI_LOG_WRITE T    #> turn on excess WRITE3 logging [ options: T | F ]
setenv FL_ERR_STOP N       #> stop on inconsistent input files
setenv PROMPTFLAG F       #> turn on I/O-API PROMPT*FILE interactive mode [ options: T | F ]
setenv IOAPI_OFFSET_64 YES #> support large timestep records (>2GB/timestep record) [ options: YES | NO ]

#> Diagnostic Output Flags
setenv CTM_CKSUM Y          #> write cksum report [ default: Y ]
setenv CLD_DIAG Y          #> write cloud diagnostic file [ default: N ]
setenv CTM_AERDIAG Y       #> aerosol diagnostic file [ default: N ]
setenv CTM_PHOTDIAG Y       #> photolysis diagnostic file [ default: N ]
setenv CTM_SSEMDIAG Y       #> sea-salt emissions diagnostic file [ default: N ]
setenv CTM_DUSTEM_DIAG Y    #> windblown dust emissions diagnostic file [ default: N ]; ignore if CTM_WB_DUST = N
setenv CTM_DEPV_FILE Y    #> write diagnostic file for deposition velocities [ default: N ]
setenv LTNGDIAG N          #> write lightning diagnostic file [ default: N ]
setenv B3GTS_DIAG Y       #> beis mass emissions diagnostic file [ default: N ]
setenv PT3DDIAG N          #> optional 3d point source emissions diagnostic file [ default: N]; ignore if CTM_PT3DEMIS = N
setenv PT3DFRAC N          #> optional layer fractions diagnostic (play) file(s) [ default: N]; ignore if CTM_PT3DEMIS = N
setenv REP_LAYER_MIN -1    #> Minimum layer for reporting plume rise info [ default: -1 ]

#> MPI Optimization Flags
setenv MPI_SM_POOL 16000    #> increase shared memory pool in case many MPI_SEND headers
setenv MP_EAGER_LIMIT 65536  #> set MPI message passing buffer size to max
setenv MP_SINGLE_THREAD yes  #> optimizate for single threaded applications [ default: no ]
setenv MP_STDOUTMODE ordered #> order output by the processor ID
setenv MP_LABELIO yes       #> label output by processor ID [ default: no ]
setenv MP_SHARED_MEMORY yes  #> force use of shared memory for tasks on same node [ default: no ]
setenv MP_ADAPTER_USE shared #> share the MP adapter with other jobs
setenv MP_CPU_USE multiple #> share the node with multiple users/jobs
setenv MP_CSS_INTERRUPT yes  #> specify whether arriving packets generate interrupts [ default: no ]

set DISP = delete          #> [ delete | update | keep ] existing output files

# =====================================================================
#> Input/Output Directories
# =====================================================================

set ICpath = ./    #> initial conditions input directory
set BCpath = ./    #> boundary conditions input directory
set EMISpath  = ./    #> surface emissions input directory
set IN_PTpath = ./    #> elevated emissions input directory (in-line point only)
set IN_LTpath = ./    #> lightning NOx input directory
set METpath = ./    #> meteorology input directory
set JVALpath  = ./    #> offline photolysis rate table directory
set OMIpath = ./    #> ozone columne data for the photolysis model
set LUpath = ./    #> BELD landuse data for windblown dust model
set SZpath = ./    #> Surf zone file for in-line seasalt emissions

set OUTDIR = ./    #> output file directory

# =====================================================================
#> Input Files
# =====================================================================

#> Initial conditions
set CGRID_FILENAME = CCTM_D51a_Linux2_x86_64intel.CGRID.${GRID_NAME}_20180625
if ( -f ${OUTDIR}/${CGRID_FILENAME} ) then
  set ICpath = ${OUTDIR}
  set ICFILE = ${CGRID_FILENAME}
else if ( -f /home/air/jinlubin/model/cmaq_west3km1/20180625/${CGRID_FILENAME} ) then
  set ICpath = /home/air/jinlubin/model/cmaq_west3km1/20180625
  set ICFILE = ${CGRID_FILENAME}
else if ( -f /home/air/jinlubin/model/cmaq_west3km1/20180624/${CGRID_FILENAME} ) then
  set ICpath =/home/air/jinlubin/model/cmaq_west3km1/20180624
  set ICFILE = ${CGRID_FILENAME}
else
  set ICFILE = ICON_D51a_${GRID_NAME}_profile
endif

#> Boundary conditions
set BCFILE = BCON_D51a_${GRID_NAME}_profile

#> Off-line photolysis rates
set JVALfile  = JTABLE_${STDATE}

#> Ozone column data
set OMIfile = OMI.dat

#> Optics file
set OPTfile = PHOT_OPTICS.dat

#> MCIP meteorology files
set EXTN = ${GRID_NAME}
setenv GRID_DOT_2D $METpath/GRIDDOT2D_${EXTN}
setenv GRID_CRO_2D $METpath/GRIDCRO2D_${EXTN}
setenv MET_CRO_2D $METpath/METCRO2D_${EXTN}
setenv MET_CRO_3D $METpath/METCRO3D_${EXTN}
setenv MET_DOT_3D $METpath/METDOT3D_${EXTN}
setenv MET_BDY_3D $METpath/METBDY3D_${EXTN}

#> Emissions files

if ( $CTM_PT3DEMIS == 'N' ) then
set EMISfile  = emis_MEIC_${GRID_NAME}_${STDATE}.ncf #> Offline 3d emissions file name
else
#> In-line emissions configuration
set STKCASEG = 12US1_G20_CB05E51
set STKCASEE = 12US1_cb05e51_G20_CB05E51
set CASE = 12CalnexBench_cb05e51_G20_CB05E51
set EMISfile  = emis_mole_all_${YMD}_${CASE}.ncf #> Surface emissions
setenv NPTGRPS 5       #> Number of elevated source groups

setenv STK_GRPS_01 $IN_PTpath/stack_groups_ptnonipm_${STKCASEG}.ncf
setenv STK_GRPS_02 $IN_PTpath/stack_groups_ptegu_${STKCASEG}.ncf
setenv STK_GRPS_03 $IN_PTpath/stack_groups_othpt_${STKCASEG}.ncf
setenv STK_GRPS_04 $IN_PTpath/stack_groups_ptfire_${YMD}_${STKCASEG}.ncf
setenv STK_GRPS_05 $IN_PTpath/stack_groups_pt_oilgas_${STKCASEG}.ncf
setenv LAYP_STTIME $STTIME
setenv LAYP_NSTEPS $NSTEPS

setenv STK_EMIS_01 $IN_PTpath/inln_mole_ptnonipm_${YMD}_${STKCASEE}.ncf
setenv STK_EMIS_02 $IN_PTpath/inln_mole_ptegu_${YMD}_${STKCASEE}.ncf
setenv STK_EMIS_03 $IN_PTpath/inln_mole_othpt_${YMD}_${STKCASEE}.ncf
setenv STK_EMIS_04 $IN_PTpath/inln_mole_ptfire_${YMD}_${STKCASEE}.ncf
setenv STK_EMIS_05 $IN_PTpath/inln_mole_pt_oilgas_${YMD}_${STKCASEE}.ncf
setenv LAYP_STDATE $STDATE
endif

#> Lightning NOx configuration
if ( $CTM_LTNG_NO == 'Y' ) then
# setenv LTNGNO $IN_LTpath/nox_CMAQ-BENCHMARK.35L.$YMD  #> offline calculated lightning NOx
setenv LTNGNO "InLine" #> set LTNGNO to "Inline" to activate in-line calculation

#> In-line lightning NOx options
setenv LTNGPARAM Y       #> use lightning parameter file? [ default: Y ]
setenv LTNGPARM_FILE $M3DATA/lightning/LTNG_RATIO.$YEAR.$MONTH.12CalnexBench.ioapi #> lightning parameter file; ignore if LTNGPARAM = N
setenv LTNGOUT $OUTDIR/$EXEC.LTNGDIAG.${CFG}_${YMD} #> lightning diagnostic file; ignore if LTNGDIAG = N
endif

#> In-line biogenic emissions configuration
if ( $CTM_BIOGEMIS == 'Y' ) then
set GSPROpath = ${M3DATA}/emis
setenv GSPRO $GSPROpath/gspro_cb05soa_notoxics_cmaq_poc_09nov2007.txt
set IN_BEISpath = ${M3DATA}/emis
setenv B3GRD    $IN_BEISpath/b3grd.smoke30_beis361.12CalnexBench.2006NLCD_FIA5.1_norm_foliage_biomass.ncf
setenv BIOG_SPRO    B10C5 # speciation profile to use for biogenics
setenv BIOSW_YN    Y    # use frost date switch [ default: Y ]
setenv BIOSEASON $IN_BEISpath/bioseason.cmaq.2011_12CalnexBench_wetland100.ghrsst.ncf #> ignore season switch file if BIOSW_YN = N
setenv SUMMER_YN    N    # Use summer normalized emissions? [ default: Y ]
setenv PX_VERSION Y    # MCIP is PX version? [ default: N ]
setenv INITIAL_RUN Y # non-existent or not using SOILINP [ default: N ]; default uses SOILINP
setenv SOILINP $OUTDIR/$EXEC.SOILINP.${CFG}_${YMD}  # Biogenic NO soil input file; ignore if INITIAL_RUN = Y
endif

#> Windblown dust emissions configuration
if ( $CTM_WB_DUST == 'Y' ) then
# Input variables for BELD3 Landuse option
setenv DUST_LU_1 $LUpath/beld3_12CalnexBench_output_a.ncf
setenv DUST_LU_2 $LUpath/beld4_12CalnexBench_output_tot.ncf
# Input variables for BELD4 Landuse option
setenv BELD4_LU $LUpath/
# All other Landuse options (USGS24, MODIS_NOAH, MODIS, NLCD50, NLCD40) read the GRID_CRO_2D file
if ( $CTM_ERODE_AGLAND == 'Y' ) then
   setenv CROPMAP01 ${M3DATA}/crop/BeginPlanting_12CalnexBench
   setenv CROPMAP04 ${M3DATA}/crop/EndPlanting_12CalnexBench
   setenv CROPMAP08 ${M3DATA}/crop/EndHarvesting_12CalnexBench
endif
endif

#> In-line sea salt emisisions configuration
setenv OCEAN_1 $SZpath/Ocean_${GRID_NAME} #> horizontal grid-dependent surf zone file

#> Bidiretional ammonia configuration
if ( $CTM_ABFLUX == 'Y' ) then
setenv E2C_Soilfile  ${M3DATA}/bidi/2011_12CalnexBench_soil.nc
setenv E2C_Fertfile  ${M3DATA}/bidi/2011_12CalnexBench_time${YMD}.nc
setenv B4LU_file    ${M3DATA}/bidi/beld4_12CalnexBench_2006nlcd.ncf
setenv E2C_SOIL ${E2C_Soilfile}
setenv E2C_FERT ${E2C_Fertfile}
setenv BELD4_LU ${B4LU_file}
endif

# =====================================================================
#> Output Files
# =====================================================================

#> set output file name extensions
setenv CTM_APPL ${CFG}_${YMD}
#> set output file names
set CONCfile  = $EXEC.CONC.${CTM_APPL}             # CTM_CONC_1
set ACONCfile = $EXEC.ACONC.${CTM_APPL}             # CTM_ACONC_1
set CGRIDfile = $EXEC.CGRID.${CTM_APPL}             # CTM_CGRID_1
set ASXfile = $EXEC.MEDIA_CONC.${CTM_APPL}       # MEDIA_CONC
set DD1file = $EXEC.DRYDEP.${CTM_APPL}          # CTM_DRY_DEP_1
set DV1file = $EXEC.DEPV.${CTM_APPL}             # CTM_DEPV_DIAG
set PT1file = $EXEC.PT3D.${CTM_APPL}             # CTM_PT3D_DIAG
set BIO1file  = $EXEC.B3GTS_S.${CTM_APPL}          # B3GTS_S
set SOIL1file = $EXEC.SOILOUT.${CTM_APPL}          # SOILOUT
set WD1file = $EXEC.WETDEP1.${CTM_APPL}          # CTM_WET_DEP_1
set WD2file = $EXEC.WETDEP2.${CTM_APPL}          # CTM_WET_DEP_2
set AV1file = $EXEC.AEROVIS.${CTM_APPL}          # CTM_VIS_1
set AD1file = $EXEC.AERODIAM.${CTM_APPL}          # CTM_DIAM_1
set RJ1file = $EXEC.PHOTDIAG1.${CTM_APPL}       # CTM_RJ_2
set RJ2file = $EXEC.PHOTDIAG2.${CTM_APPL}       # CTM_RJ_2
set SSEfile = $EXEC.SSEMIS.$CTM_APPL             # CTM_SSEMIS_1
set DSEfile = $EXEC.DUSTEMIS.$CTM_APPL          # CTM_DUST_EMIS_1
set PA1file = $EXEC.PA_1.${CTM_APPL}             # CTM_IPR_1
set PA2file = $EXEC.PA_2.${CTM_APPL}             # CTM_IPR_2
set PA3file = $EXEC.PA_3.${CTM_APPL}             # CTM_IPR_3
set IRR1file  = $EXEC.IRR_1.${CTM_APPL}             # CTM_IRR_1
set IRR2file  = $EXEC.IRR_2.${CTM_APPL}             # CTM_IRR_2
set IRR3file  = $EXEC.IRR_3.${CTM_APPL}             # CTM_IRR_3
set DVMfile = $EXEC.DEPVFST.${CTM_APPL}          # CTM_DEPV_FST
set DVFfile = $EXEC.DEPVMOS.${CTM_APPL}          # CTM_DEPV_MOS
set DDFfile = $EXEC.DDFST.${CTM_APPL}             # CTM_DRY_DEP_FST
set DDMfile = $EXEC.DDMOS.${CTM_APPL}             # CTM_DRY_DEP_MOS
#> In-line biogenic emissions output files
if ( $CTM_BIOGEMIS == 'Y' ) then
setenv B3GTS_S $OUTDIR/$EXEC".B3GTS_S".${CTM_APPL}
setenv SOILOUT $OUTDIR/$EXEC".SOILOUT".${CTM_APPL}  # Biogenic NO soil output file
endif

#> set floor file (neg concs)
setenv FLOOR_FILE $BASE/FLOOR_${CTM_APPL}

#> create output directory
if ( ! -d "$OUTDIR" ) mkdir -p $OUTDIR

#> look for existing log files

set test = `ls CTM_LOG_???.${CTM_APPL}`
if ( "$test" != "" ) then
if ( $DISP == 'delete' ) then
   echo " ancillary log files being deleted"
   foreach file ( $test )
      echo " deleting $file"
      rm -f $file
   end
else
   echo "*** Logs exist - run ABORTED ***"
   exit 1
endif
endif

#> for the run control ...

setenv CTM_STDATE    $STDATE
setenv CTM_STTIME    $STTIME
setenv CTM_RUNLEN    $NSTEPS
setenv CTM_TSTEP    $TSTEP
setenv EMIS_1 $EMISpath/$EMISfile
setenv INIT_GASC_1 $ICpath/$ICFILE
setenv INIT_AERO_1 $INIT_GASC_1
setenv INIT_NONR_1 $INIT_GASC_1
setenv INIT_TRAC_1 $INIT_GASC_1
setenv BNDY_GASC_1 $BCpath/$BCFILE
setenv BNDY_AERO_1 $BNDY_GASC_1
setenv BNDY_NONR_1 $BNDY_GASC_1
setenv BNDY_TRAC_1 $BNDY_GASC_1
setenv OMI $OMIpath/$OMIfile
setenv OPTICS_DATA $BLD/$OPTfile
setenv XJ_DATA $JVALpath/$JVALfile
set TR_DVpath = $METpath
set TR_DVfile = $MET_CRO_2D

#> species defn & photolysis
setenv gc_matrix_nml ${BLD}/GC_$MECH.nml
setenv ae_matrix_nml ${BLD}/AE_$MECH.nml
setenv nr_matrix_nml ${BLD}/NR_$MECH.nml
setenv tr_matrix_nml ${BLD}/Species_Table_TR_0.nml

#> check for photolysis input data
setenv CSQY_DATA ${BLD}/CSQY_DATA_$MECH

if (! (-e $CSQY_DATA ) ) then
echo " $CSQY_DATA  not found "
exit 1
endif
if (! (-e $OPTICS_DATA ) ) then
echo " $OPTICS_DATA  not found "
exit 1
endif

rm -f  $EXEC.CONC.${CTM_APPL}             # CTM_CONC_1
rm -f  $EXEC.ACONC.${CTM_APPL}             # CTM_ACONC_1
rm -f  $EXEC.CGRID.${CTM_APPL}             # CTM_CGRID_1
rm -f  $EXEC.MEDIA_CONC.${CTM_APPL}       # MEDIA_CONC
rm -f  $EXEC.DRYDEP.${CTM_APPL}          # CTM_DRY_DEP_1
rm -f  $EXEC.DEPV.${CTM_APPL}             # CTM_DEPV_DIAG
rm -f  $EXEC.PT3D.${CTM_APPL}             # CTM_PT3D_DIAG
rm -f  $EXEC.B3GTS_S.${CTM_APPL}          # B3GTS_S
rm -f  $EXEC.SOILOUT.${CTM_APPL}          # SOILOUT
rm -f  $EXEC.WETDEP1.${CTM_APPL}          # CTM_WET_DEP_1
rm -f  $EXEC.WETDEP2.${CTM_APPL}          # CTM_WET_DEP_2
rm -f  $EXEC.AEROVIS.${CTM_APPL}          # CTM_VIS_1
rm -f  $EXEC.AERODIAM.${CTM_APPL}          # CTM_DIAM_1
rm -f  $EXEC.PHOTDIAG1.${CTM_APPL}       # CTM_RJ_2
rm -f  $EXEC.PHOTDIAG2.${CTM_APPL}       # CTM_RJ_2
rm -f  $EXEC.SSEMIS.$CTM_APPL             # CTM_SSEMIS_1
rm -f  $EXEC.DUSTEMIS.$CTM_APPL          # CTM_DUST_EMIS_1
rm -f  $EXEC.PA_1.${CTM_APPL}             # CTM_IPR_1
rm -f  $EXEC.PA_2.${CTM_APPL}             # CTM_IPR_2
rm -f  $EXEC.PA_3.${CTM_APPL}             # CTM_IPR_3
rm -f  $EXEC.IRR_1.${CTM_APPL}             # CTM_IRR_1
rm -f  $EXEC.IRR_2.${CTM_APPL}             # CTM_IRR_2
rm -f  $EXEC.IRR_3.${CTM_APPL}             # CTM_IRR_3
rm -f  $EXEC.DEPVFST.${CTM_APPL}          # CTM_DEPV_FST
rm -f  $EXEC.DEPVMOS.${CTM_APPL}          # CTM_DEPV_MOS
rm -f  $EXEC.DDFST.${CTM_APPL}             # CTM_DRY_DEP_FST
rm -f  $EXEC.DDMOS.${CTM_APPL}             # CTM_DRY_DEP_MOS

#>- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

source $BASE/outck.q

ls -l $BLD/$EXEC; size $BLD/$EXEC
unlimit
limit

if ( $PROC == serial ) then
#> Executable call for single PE, uncomment to invoke
/usr/bin/time  $BLD/$EXEC

else
#> Executable call for multi PE, configure for your system
# set MPI = /usr/local/intel/impi/3.2.2.006/bin64
# set MPIRUN = $MPI/mpirun
time mpirun -n $NPROCS $BLD/$EXEC
endif

end

date
exit

changsc · 发表于 2018-8-31 15:48:20

楼主，你是从26号开始run的，但最后的错误提示是没有26号的CGRID文件。这样的情况可能是前面已经出错了，然后循环到下一天在寻找CGRID时断掉了。建议你打开LOG文件，再往前找找，或者搜索ERROR，看真正的错误是什么。

NUIST_ZZD · 发表于 2018-8-31 20:23:26

changsc 发表于 2018-8-31 15:48
楼主，你是从26号开始run的，但最后的错误提示是没有26号的CGRID文件。这样的情况可能是前面已经出错了，然 ...

我刚上手，不是很了解，但ERROR我查过了，就只有我列出来的这个地方。如果说是CGRID的问题，那就是在CCTM里的设置存在问题了吗

dousha12321 · 发表于 2019-3-15 16:32:54

Lighting 发表于 2018-8-30 22:19
你最好把整个cctm的log文件贴出来，然后把cctm运行的脚本也贴出来

前辈能不能帮我看下之前能转出结果气象数据和海洋数据没问题  Input data path, M3DATA set to /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data

2019年 03月 15日星期五 16:18:36 CST

model    CCTM_V5g_Linux2_x86_64pgf;

FPP       pgf90;

cpp_flags " -Dparallel -DSUBST_MODULES=SE_MODULES -DSUBST_BARRIER=SE_BARRIER -DSUBST_GLOBAL_MAX=SE_GLOBAL_MAX -DSUBST_GLOBAL_MIN=SE_GLOBAL_MIN -DSUBST_GLOBAL_MIN_DATA=SE_GLOBAL_MIN_DATA -DSUBST_GLOBAL_TO_LOCAL_COORD=SE_GLOBAL_TO_LOCAL_COORD -DSUBST_GLOBAL_SUM=SE_GLOBAL_SUM -DSUBST_GLOBAL_LOGICAL=SE_GLOBAL_LOGICAL -DSUBST_LOOP_INDEX=SE_LOOP_INDEX -DSUBST_SUBGRID_INDEX=SE_SUBGRID_INDEX -DSUBST_HI_LO_BND_PE=SE_HI_LO_BND_PE -DSUBST_SUM_CHK=SE_SUM_CHK -DSUBST_INIT_ARRAY=SE_INIT_ARRAY -DSUBST_COMM=SE_COMM -DSUBST_MY_REGION=SE_MY_REGION -DSUBST_SLICE=SE_SLICE -DSUBST_GATHER=SE_GATHER -DSUBST_DATA_COPY=SE_DATA_COPY -DSUBST_IN_SYN=SE_IN_SYN";

f_compiler  pgf90;

f_flags    "-Mfixed -Mextend -O3 -I /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/ioapi_3.1/Linux2_x86_64pgf -I /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/pario -I /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/se_snl -I.";

f90_flags "-Mfree -O3 -I /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/ioapi_3.1/Linux2_x86_64pgf -I /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/pario -I /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/se_snl -I.";

c_flags    "-O2 -DFLDMN -I /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/mpich/include";

link_flags  "";

libraries "-L/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/se_snl -lse_snl -L/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/pario -lpario  -L/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/mpich/lib -lmpich -lmpichf90 -lmpichf90 -lmpich -lopa -lpthread -lrt -L/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/ioapi_3.1/Linux2_x86_64pgf -lioapi -L/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/netcdf/lib -lnetcdf";

global    verbose;

// mechanism: cb05tucl_ae6_aq
// project archive: /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/models/CCTM

include SUBST_PE_COMM /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/PE_COMM.EXT;
include SUBST_CONST    /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/CONST.EXT;
include SUBST_FILES_ID /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/FILES_CTM.EXT;
include SUBST_EMISPRM /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/EMISPRM.EXT;
include SUBST_RXCMMN    /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/RXCM.EXT;
include SUBST_RXDATA    /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/RXDT.EXT;

// Process Analysis / Integrated Reaction Rates processing
include SUBST_PACTL_ID /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/PA_CTL.EXT;
include SUBST_PACMN_ID /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/PA_CMN.EXT;
include SUBST_PADAT_ID /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/PA_DAT.EXT;

// Parallel / Include message passing definitions
include SUBST_MPI /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/lib/x86_64/pgf/mpich/include/mpif.h ;

// options are ctm_wrf and ctm_yamo
module ctm_wrf release ;

// options are cartesian
module cartesian release ;

// options are par, par_nodistr and par_noop
module par_nodistr release ;

// options are init_yamo
module init_yamo release ;

// options are
// yamo option does not need denrate

// options are gencoor_wrf and gencoor
module gencoor_wrf release ;

// options are hyamo
module hyamo release ;

// options are vwrf and vyamo
module vwrf release ;

// options are multiscale
module multiscale release ;

// options are acm2 and acm2_mp
module acm2 release ;

// options are m3dry and m3dry_mp
module m3dry release ;

// options are emis
module emis release ;

// options are beis3
module beis3 release ;

// options are smoke
module smoke release ;

// options are cgrid_spcs_nml and cgrid_spcs_icl
module cgrid_spcs_nml release ;

// options are phot_inline and phot_table
module phot_inline release ;

// options are smvgear, ros3, ebi_cb05cl, ebi_cb05tucl, ebi_cb05tump, ebi_saprc99, ebi_saprc07tb, and ebi_saprc07tc
module ebi_cb05tucl release ;

// options are aero5, aero6, and aero6_mp
module aero6 release ;

// options are cloud_acm_ae5, cloud_acm_ae6, and cloud_acm_ae6_mp
module cloud_acm_ae6 release ;

// options are pa, which requires the replacement of the three
// global include files with their pa_noop counterparts
module pa release ;

// options are util
module util release ;

ancillary log files being deleted
deleting CTM_LOG_001.CN1SC_188X188_20180612
deleting CTM_LOG_002.CN1SC_188X188_20180612
deleting CTM_LOG_003.CN1SC_188X188_20180612
deleting CTM_LOG_004.CN1SC_188X188_20180612
deleting CTM_LOG_005.CN1SC_188X188_20180612
deleting CTM_LOG_006.CN1SC_188X188_20180612
deleting CTM_LOG_007.CN1SC_188X188_20180612
-rwxr-xr-x. 1 16yiny users 8806424 3月  15 11:30 /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/CCTM_V5g_Linux2_x86_64pgf
text    data       bss       dec       hex filename
3622914 4467956 7025632 15116502    e6a8d6 /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/CCTM_V5g_Linux2_x86_64pgf
cputime    unlimited
filesize    unlimited
datasize    unlimited
stacksize unlimited
coredumpsize unlimited
memoryuse unlimited
vmemoryuse unlimited
descriptors  4096
memorylocked 64 kbytes
maxproc    513769

   This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
   I/O Applications Programming Interface, [I/O API] which is
   built on top of the netCDF I/O library (Copyright 1993, 1996
   University Corporation for Atmospheric Research/Unidata
   Program) and the PVM parallel-programming library (from
   Oak Ridge National Laboratory).  Copyright (C) 1992-2002 MCNC,
   (C) 1992-2013 Carlie J. Coats, Jr., and (C) 2003-2012 Baron
   Advanced Meteorological Systems, LLC and released under the
   GNU LGPL  License, version 2.1.  See URL

      https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html

   for conditions of use.

   $Id:: init3.F 178 2015-03-02 16:35:15Z coats             $
   netCDF version "4.0.1" of May 28 2018 10:29:20 $


   This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
   I/O Applications Programming Interface, [I/O API] which is
   built on top of the netCDF I/O library (Copyright 1993, 1996
   University Corporation for Atmospheric Research/Unidata

   This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
   I/O Applications Programming Interface, [I/O API] which is
   built on top of the netCDF I/O library (Copyright 1993, 1996
   University Corporation for Atmospheric Research/Unidata
   Program) and the PVM parallel-programming library (from
   Oak Ridge National Laboratory).  Copyright (C) 1992-2002 MCNC,
   (C) 1992-2013 Carlie J. Coats, Jr., and (C) 2003-2012 Baron
   Advanced Meteorological Systems, LLC and released under the
   GNU LGPL  License, version 2.1.  See URL

      https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html

   for conditions of use.

   $Id:: init3.F 178 2015-03-02 16:35:15Z coats             $
   netCDF version "4.0.1" of May 28 2018 10:29:20 $

   Program) and the PVM parallel-programming library (from
   Oak Ridge National Laboratory).  Copyright (C) 1992-2002 MCNC,
   (C) 1992-2013 Carlie J. Coats, Jr., and (C) 2003-2012 Baron
   Advanced Meteorological Systems, LLC and released under the
   GNU LGPL  License, version 2.1.  See URL

      https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html

   for conditions of use.

   $Id:: init3.F 178 2015-03-02 16:35:15Z coats             $
   Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048
   netCDF version "4.0.1" of May 28 2018 10:29:20 $



   EXECUTION_ID: CCTM_V5g_Linux2_x86_64pgf
   This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
   I/O Applications Programming Interface, [I/O API] which is
   built on top of the netCDF I/O library (Copyright 1993, 1996
   University Corporation for Atmospheric Research/Unidata
   Program) and the PVM parallel-programming library (from
   Oak Ridge National Laboratory).  Copyright (C) 1992-2002 MCNC,
   (C) 1992-2013 Carlie J. Coats, Jr., and (C) 2003-2012 Baron
   Advanced Meteorological Systems, LLC and released under the
   GNU LGPL  License, version 2.1.  See URL

      https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html

   for conditions of use.

   $Id:: init3.F 178 2015-03-02 16:35:15Z coats             $
   netCDF version "4.0.1" of May 28 2018 10:29:20 $


   This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
   I/O Applications Programming Interface, [I/O API] which is
   built on top of the netCDF I/O library (Copyright 1993, 1996
   University Corporation for Atmospheric Research/Unidata
   Program) and the PVM parallel-programming library (from
   Oak Ridge National Laboratory).  Copyright (C) 1992-2002 MCNC,
   (C) 1992-2013 Carlie J. Coats, Jr., and (C) 2003-2012 Baron
   Advanced Meteorological Systems, LLC and released under the
   GNU LGPL  License, version 2.1.  See URL

      https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html

   for conditions of use.

   $Id:: init3.F 178 2015-03-02 16:35:15Z coats             $
   netCDF version "4.0.1" of May 28 2018 10:29:20 $
   This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
   I/O Applications Programming Interface, [I/O API] which is


   built on top of the netCDF I/O library (Copyright 1993, 1996
   University Corporation for Atmospheric Research/Unidata
   Program) and the PVM parallel-programming library (from
   Oak Ridge National Laboratory).  Copyright (C) 1992-2002 MCNC,
   (C) 1992-2013 Carlie J. Coats, Jr., and (C) 2003-2012 Baron
   Advanced Meteorological Systems, LLC and released under the
   GNU LGPL  License, version 2.1.  See URL

      https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html

   for conditions of use.

   $Id:: init3.F 178 2015-03-02 16:35:15Z coats             $
   netCDF version "4.0.1" of May 28 2018 10:29:20 $


   This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
   I/O Applications Programming Interface, [I/O API] which is
   built on top of the netCDF I/O library (Copyright 1993, 1996
   University Corporation for Atmospheric Research/Unidata
   Program) and the PVM parallel-programming library (from
   Oak Ridge National Laboratory).  Copyright (C) 1992-2002 MCNC,
   (C) 1992-2013 Carlie J. Coats, Jr., and (C) 2003-2012 Baron
   Advanced Meteorological Systems, LLC and released under the
   GNU LGPL  License, version 2.1.  See URL

      https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html

   for conditions of use.

   $Id:: init3.F 178 2015-03-02 16:35:15Z coats             $
   netCDF version "4.0.1" of May 28 2018 10:29:20 $


   This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
   I/O Applications Programming Interface, [I/O API] which is
   built on top of the netCDF I/O library (Copyright 1993, 1996
   University Corporation for Atmospheric Research/Unidata
   Program) and the PVM parallel-programming library (from
   Oak Ridge National Laboratory).  Copyright (C) 1992-2002 MCNC,
   (C) 1992-2013 Carlie J. Coats, Jr., and (C) 2003-2012 Baron
   Advanced Meteorological Systems, LLC and released under the
   GNU LGPL  License, version 2.1.  See URL

      https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html

   for conditions of use.

   $Id:: init3.F 178 2015-03-02 16:35:15Z coats             $
   netCDF version "4.0.1" of May 28 2018 10:29:20 $

   Value for GRID_NAME:  'CN1SC_188X188'
   Value for GRID_NAME:  'CN1SC_188X188'

   File "GRIDDESC" opened for input on unit:  99
   /home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/mcip/GRIDDESC

   Value for NPCOL_NPROW:  '4 2'
   Value for NPCOL_NPROW:  '4 2'
   Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE

   "MET_CRO_3D" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/mcip//METCRO3D_2018163"
   File type GRDDED3
   Execution ID "mcip"
   Grid name "METCRO_CN1SC_188"
   Dimensions: 188 rows, 188 cols, 26 lays, 12 vbles
   NetCDF ID:       12  opened as READONLY
   Starting date and time  2018163:000000 (0:00:00 June 12, 2018)
   Timestep                         010000 (1:00:00 hh:mm:ss)
   Maximum current record number    121

   GC Species Namelist:
/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/GC_cb05tucl_ae6_aq.nml

   AE Species Namelist:
/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/AE_cb05tucl_ae6_aq.nml

   NR Species Namelist:
/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/NR_cb05tucl_ae6_aq.nml

   TR Species Namelist:
/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/scripts/cctm/BLD_V5g/Species_Table_TR_0.nml

   -=-  MPP Processor-to-Subdomain Map  -=-
  ___________________________________________________
  |                                              |
  | PE    #Rows Row_Range    #Cols Col_Range |
  |_________________________________________________|
  |                                              |
  |  1    94    1:  94       47    1:  47 |
  |  2    94    1:  94       47    48:  94 |
  |  3    94    1:  94       47    95: 141 |
  |  4    94    1:  94       47    142: 188 |
  |  5    94    95: 188       47    1:  47 |
  |  6    94    95: 188       47    48:  94 |
  |  7    94    95: 188       47    95: 141 |
  |  8    94    95: 188       47    142: 188 |
  |_________________________________________________|

   Value for PA_BCOL_ECOL not defined; returning defaultval ':  'VARLIST'
   Value for PA_BCOL_ECOL not defined; returning defaultval ':  'VARLIST'

   >>--->> WARNING in subroutine GET_ENVLIST
   Environment variable PA_BCOL_ECOL                   not set

   Value for PA_BROW_EROW not defined; returning defaultval ':  'VARLIST'
   Value for PA_BROW_EROW not defined; returning defaultval ':  'VARLIST'

   >>--->> WARNING in subroutine GET_ENVLIST
   Environment variable PA_BROW_EROW                   not set

   Value for PA_BLEV_ELEV not defined; returning defaultval ':  'VARLIST'
   Value for PA_BLEV_ELEV not defined; returning defaultval ':  'VARLIST'

   >>--->> WARNING in subroutine GET_ENVLIST
   Environment variable PA_BLEV_ELEV                   not set

   Value for CONC_SPCS not defined; returning defaultval ':  'VARLIST'
   Value for CONC_SPCS not defined; returning defaultval ':  'VARLIST'

   >>--->> WARNING in subroutine GET_ENVLIST
   Environment variable CONC_SPCS                      not set

   Value for CONC_BLEV_ELEV not defined; returning defaultval ':  'VARLIST'
   Value for CONC_BLEV_ELEV not defined; returning defaultval ':  'VARLIST'

   >>--->> WARNING in subroutine GET_ENVLIST
   Environment variable CONC_BLEV_ELEV                not set

   Value for AVG_CONC_SPCS:  'O3 NO CO NO2 ASO4I ASO4J NH3'
   Value for AVG_CONC_SPCS:  'O3 NO CO NO2 ASO4I ASO4J NH3'
   Value for ACONC_BLEV_ELEV:  ' 1 1'
   Value for ACONC_BLEV_ELEV:  ' 1 1'
   Value for CTM_WVEL:  Y returning TRUE
   Value for CTM_TSTEP:  10000
   Value for CTM_PROGNAME:  'CCTM_V5g_Linux2_'
   Value for CTM_PROGNAME:  'CCTM_V5g_Linux2_'
   Value for CTM_STDATE:  2018163
   Value for CTM_STTIME:  0
   Value for CTM_RUNLEN:  240000

   "GRID_CRO_2D" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/mcip//GRIDCRO2D_2018163"
   File type GRDDED3
   Execution ID "mcip"
   Grid name "GRIDOUT_CN1SC_18"
   Dimensions: 188 rows, 188 cols, 1 lays, 31 vbles
   NetCDF ID:       19  opened as READONLY
   Time-independent data.

   "INIT_GASC_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/icon/ICON_V5g_CN1SC_188X188_profile"
   File type GRDDED3
   Execution ID "ICON_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 26 lays, 78 vbles
   NetCDF ID:       20  opened as READONLY
   Time-independent data.

   IC/BC Factors used for transported gas-phase species
   1  NO2             1.0000
   2  NO                1.0000
   No IC found for species O in INIT_GASC_1; set to 1.00E-30
   3  O3                1.0000
   4  NO3             1.0000
   No IC found for species O1D in INIT_GASC_1; set to 1.00E-30
   5  OH                1.0000
   6  HO2             1.0000
   7  N2O5             1.0000
   8  HNO3             1.0000
   9  HONO             1.0000
   10  PNA             1.0000
   11  H2O2             1.0000
   No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30
   No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30
   12  NTR             1.0000
   13  ROOH             1.0000
   14  FORM             1.0000
   15  ALD2             1.0000
   No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30
   16  PAR             1.0000
   17  CO                1.0000
   No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30
   18  MEPX             1.0000
   No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30
   No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30
   19  FACD             1.0000
   20  C2O3             1.0000
   21  PAN             1.0000
   22  PACD             1.0000
   23  AACD             1.0000
   No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30
   24  PANX             1.0000
   No IC found for species ROR in INIT_GASC_1; set to 1.00E-30
   25  OLE             1.0000
   26  ETH             1.0000
   27  IOLE             1.0000
   28  TOL             1.0000
   29  CRES             1.0000
   No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30
   No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30
   30  OPEN             1.0000
   31  MGLY             1.0000
   No IC found for species CRO in INIT_GASC_1; set to 1.00E-30
   No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30
   No IC found for species CRON in INIT_GASC_1; set to 1.00E-30
   No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30
   No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30
   No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30
   No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30
   No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30
   No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30
   32  XYL             1.0000
   No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30
   33  ISOP             1.0000
   No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30
   No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30
   No IC found for species TERP in INIT_GASC_1; set to 1.00E-30
   No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30
   34  SO2             1.0000
   35  SULF             1.0000
   No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30
   No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30
   36  ETHA             1.0000
   No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30
   No IC found for species CL in INIT_GASC_1; set to 1.00E-30
   No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30
   No IC found for species CLO in INIT_GASC_1; set to 1.00E-30
   No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30
   No IC found for species HCL in INIT_GASC_1; set to 1.00E-30
   No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30
   No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30
   No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30
   No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30
   37  BENZENE          1.0000
   No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30
   No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30
   No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30
   No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30
   No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30

   GC loaded into CGRID

   Density*Jacobian loaded into CGRID

   "INIT_AERO_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/icon/ICON_V5g_CN1SC_188X188_profile"
   File type GRDDED3
   Execution ID "ICON_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 26 lays, 78 vbles
   NetCDF ID:       21  opened as READONLY
   Time-independent data.

   IC/BC Factors used for transported aerosol species
   38  ASO4J             1.0000
   39  ASO4I             1.0000
   No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30
   No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30
   No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30
   No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30
   40  AALKJ             1.0000
   41  AXYL1J          1.0000
   42  AXYL2J          1.0000
   43  AXYL3J          1.0000
   44  ATOL1J          1.0000
   45  ATOL2J          1.0000
   46  ATOL3J          1.0000
   47  ABNZ1J          1.0000
   48  ABNZ2J          1.0000
   49  ABNZ3J          1.0000
   50  ATRP1J          1.0000
   51  ATRP2J          1.0000
   52  AISO1J          1.0000
   53  AISO2J          1.0000
   54  ASQTJ             1.0000
   No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species APOCJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species APOCI in INIT_AERO_1; set to 1.00E-30
   No IC found for species APNCOMJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species APNCOMI in INIT_AERO_1; set to 1.00E-30
   No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species AECI in INIT_AERO_1; set to 1.00E-30
   No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30
   No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30
   55  ACORS             1.0000
   56  ASOIL             1.0000
   57  NUMATKN          1.0000
   58  NUMACC          1.0000
   59  NUMCOR          1.0000
   60  SRFATKN          1.0000
   61  SRFACC          1.0000
   62  SRFCOR          1.0000
   No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30
   No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30
   No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30
   No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30
   No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30
   No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30
   No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30
   No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30
   No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30
   No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30
   63  AISO3J          1.0000
   64  AOLGAJ          1.0000
   65  AOLGBJ          1.0000

   AE loaded into CGRID

   "INIT_NONR_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/icon/ICON_V5g_CN1SC_188X188_profile"
   File type GRDDED3
   Execution ID "ICON_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 26 lays, 78 vbles
   NetCDF ID:       22  opened as READONLY
   Time-independent data.

   IC/BC Factors used for transported non-reactive gas species
   66  NH3             1.0000
   67  SV_ALK          1.0000
   68  SV_XYL1          1.0000
   69  SV_XYL2          1.0000
   70  SV_TOL1          1.0000
   71  SV_TOL2          1.0000
   72  SV_BNZ1          1.0000
   73  SV_BNZ2          1.0000
   74  SV_TRP1          1.0000
   75  SV_TRP2          1.0000
   76  SV_ISO1          1.0000
   77  SV_ISO2          1.0000
   78  SV_SQT          1.0000

   NR loaded into CGRID
   CTM_CONC_1    :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.CONC.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   Could not open CTM_CONC_1 for update - try to open new

   Conc File Header Description:
   => Concentration file output
   => From CMAQ model dyn alloc version CTM
   => Set of variables (possibly) reduced from CGRID
   => For next scenario continuation runs,
   => use the "one-step" CGRID file
   => Layer  1 to  1
   => Layer  2 to  2
   => Layer  3 to  3
   => Layer  4 to  4
   => Layer  5 to  5
   => Layer  6 to  6
   => Layer  7 to  7
   => Layer  8 to  8
   => Layer  9 to  9
   => Layer 10 to 10
   => Layer 11 to 11
   => Layer 12 to 12
   => Layer 13 to 13
   => Layer 14 to 14
   => Layer 15 to 15
   => Layer 16 to 16
   => Layer 17 to 17
   => Layer 18 to 18
   => Layer 19 to 19
   => Layer 20 to 20
   => Layer 21 to 21
   => Layer 22 to 22
   => Layer 23 to 23
   => Layer 24 to 24
   => Layer 25 to 25
   => Layer 26 to 26

   Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE
   Value for IOAPI_OFFSET_64:  NO returning FALSE

   "CTM_CONC_1" opened as NEW(READ-WRITE )
   File name "/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.CONC.CN1SC_188X188_20180612"
   File type GRDDED3
   Execution ID "CCTM_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 26 lays, 143 vbles
   NetCDF ID:       23  opened as VOLATILE READWRITE
   Starting date and time  2018163:000000 (0:00:00 June 12, 2018)
   Timestep                         010000 (1:00:00 hh:mm:ss)
   Maximum current record number       0


   Gas Chem species saved to CONC file:
   Value for IOAPI_LOG_WRITE:  F returning FALSE
   Value for IOAPI_LOG_WRITE:  F returning FALSE
      1 (  1) NO2
      2 (  2) NO
      3 (  3) O
      4 (  4) O3
      5 (  5) NO3
      6 (  6) O1D
      7 (  7) OH
      8 (  8) HO2
      9 (  9) N2O5
   10 ( 10) HNO3
   11 ( 11) HONO
   12 ( 12) PNA
   13 ( 13) H2O2
   14 ( 14) XO2
   15 ( 15) XO2N
   16 ( 16) NTR
   17 ( 17) ROOH
   18 ( 18) FORM
   19 ( 19) ALD2
   20 ( 20) ALDX
   21 ( 21) PAR
   22 ( 22) CO
   23 ( 23) MEO2
   24 ( 24) MEPX
   25 ( 25) MEOH
   26 ( 26) HCO3
   27 ( 27) FACD
   28 ( 28) C2O3
   29 ( 29) PAN
   30 ( 30) PACD
   31 ( 31) AACD
   32 ( 32) CXO3
   33 ( 33) PANX
   34 ( 34) ROR
   35 ( 35) OLE
   36 ( 36) ETH
   37 ( 37) IOLE
   38 ( 38) TOL
   39 ( 39) CRES
   40 ( 40) TO2
   41 ( 41) TOLRO2
   42 ( 42) OPEN
   43 ( 43) MGLY
   44 ( 44) CRO
   45 ( 45) CAT1
   46 ( 46) CRON
   47 ( 47) CRNO
   48 ( 48) CRN2
   49 ( 49) CRPX
   50 ( 50) OPO3
   51 ( 51) CAO2
   52 ( 52) OPAN
   53 ( 53) XYL
   54 ( 54) XYLRO2
   55 ( 55) ISOP
   56 ( 56) ISPD
   57 ( 57) TERP
   58 ( 58) SO2
   59 ( 59) SULF
   60 ( 60) ETOH
   61 ( 61) ETHA
   62 ( 62) CL2
   63 ( 63) CL
   64 ( 64) HOCL
   65 ( 65) CLO
   66 ( 66) FMCL
   67 ( 67) HCL
   68 ( 68) BENZENE
   69 ( 69) BENZRO2
   70 ( 70) SESQ

   Aerosol species saved to CONC file:
      1 ( 71) ASO4J
      2 ( 72) ASO4I
      3 ( 73) ANH4J
      4 ( 74) ANH4I
      5 ( 75) ANO3J
      6 ( 76) ANO3I
      7 ( 77) AALKJ
      8 ( 78) AXYL1J
      9 ( 79) AXYL2J
   10 ( 80) AXYL3J
   11 ( 81) ATOL1J
   12 ( 82) ATOL2J
   13 ( 83) ATOL3J
   14 ( 84) ABNZ1J
   15 ( 85) ABNZ2J
   16 ( 86) ABNZ3J
   17 ( 87) ATRP1J
   18 ( 88) ATRP2J
   19 ( 89) AISO1J
   20 ( 90) AISO2J
   21 ( 91) ASQTJ
   22 ( 92) AORGCJ
   23 ( 93) APOCJ
   24 ( 94) APOCI
   25 ( 95) APNCOMJ
   26 ( 96) APNCOMI
   27 ( 97) AECJ
   28 ( 98) AECI
   29 ( 99) AOTHRJ
   30 (100) AFEJ
   31 (101) AALJ
   32 (102) ASIJ
   33 (103) ATIJ
   34 (104) ACAJ
   35 (105) AMGJ
   36 (106) AKJ
   37 (107) AMNJ
   38 (108) ACORS
   39 (109) ASOIL
   40 (110) NUMATKN
   41 (111) NUMACC
   42 (112) NUMCOR
   43 (113) SRFATKN
   44 (114) SRFACC
   45 (115) SRFCOR
   46 (116) AH2OJ
   47 (117) AH2OI
   48 (118) ANAJ
   49 (119) ACLJ
   50 (120) ACLI
   51 (121) ASEACAT
   52 (122) ACLK
   53 (123) ASO4K
   54 (124) ANH4K
   55 (125) ANO3K
   56 (126) AH2OK
   57 (127) AISO3J
   58 (128) AOLGAJ
   59 (129) AOLGBJ

   Non-reactive species saved to CONC file:
      1 (130) NH3
      2 (131) SV_ALK
      3 (132) SV_XYL1
      4 (133) SV_XYL2
      5 (134) SV_TOL1
      6 (135) SV_TOL2
      7 (136) SV_BNZ1
      8 (137) SV_BNZ2
      9 (138) SV_TRP1
   10 (139) SV_TRP2
   11 (140) SV_ISO1
   12 (141) SV_ISO2
   13 (142) SV_SQT

   Derived Vert Vel Comp species saved to CONC file: W_VEL

   Timestep written to CTM_CONC_1    for date and time  2018163:000000
   from timestep on initial data files for date and time  2018163:000000
after  INITSCEN G  1.2192815E-01 A  1.2115820E+09 N  1.0534080E-04
   Value for CTM_IPR_1:  '/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.PA_1.CN1SC_188X188_20180612 -v'
   Value for CTM_IPR_1:  '/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.PA_1.CN1SC_188X188_20180612 -v'
   CTM_IPR_1    :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.PA_1.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   Could not open CTM_IPR_1 file for update - try to open new

   "CTM_IPR_1" opened as NEW(READ-WRITE )
   File name "/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.PA_1.CN1SC_188X188_20180612"
   File type GRDDED3
   Execution ID "CCTM_V5g_Linux2_x86_64pgf"
   Grid name "METCRO_CN1SC_188"
   Dimensions: 188 rows, 188 cols, 26 lays, 9 vbles
   NetCDF ID:       24  opened as VOLATILE READWRITE
   Starting date and time  2018163:010000 (1:00:00 June 12, 2018)
   Timestep                         010000 (1:00:00 hh:mm:ss)
   Maximum current record number       0
   Opened Integrated Reaction Rate Output File: CTM_IPR_1

   = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = =

   Value for FL_ERR_STOP:  F returning FALSE
   Value for CTM_RUNLEN:  240000

   "GRID_DOT_2D" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/mcip//GRIDDOT2D_2018163"
   File type GRDDED3
   Execution ID "mcip"
   Grid name "GRIDOUT_CN1SC_18"
   Dimensions: 189 rows, 189 cols, 1 lays, 9 vbles
   NetCDF ID:       25  opened as READONLY
   Time-independent data.
   Checking header data for file: GRID_DOT_2D
   Checking header data for file: GRID_CRO_2D
   GRID_CRO_3D    :GRID_CRO_3D

   >>--->> WARNING in subroutine OPEN3
   File not available.

   GRID_BDY_2D    :GRID_BDY_2D

   >>--->> WARNING in subroutine OPEN3
   File not available.


   "EMIS_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/emis/agts_l.area.20180612.5.cn1-sc.nctox.ncf"
   File type GRDDED3
   Execution ID "????????????????"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 1 lays, 46 vbles
   NetCDF ID:       26  opened as READONLY
   Starting date and time  2018163:000000 (0:00:00 June 12, 2018)
   Timestep                         010000 (1:00:00 hh:mm:ss)
   Maximum current record number    121
   Checking header data for file: EMIS_1

   "OCEAN_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/ocean/lanzhou1_Ocean01"
   File type GRDDED3
   Execution ID "????????????????"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 4 lays, 3 vbles
   NetCDF ID:       27  opened as READONLY
   Time-independent data.
   Checking header data for file: OCEAN_1
      Inconsistent values for NLAYS: 4 versus 26
   MET_BDY_2D    :MET_BDY_2D

   >>--->> WARNING in subroutine OPEN3
   File not available.


   "MET_BDY_3D" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/mcip//METBDY3D_2018163"
   File type BNDARY3
   Execution ID "mcip"
   Grid name "METCRO_CN1SC_188"
   Dimensions: 188 rows, 188 cols, 26 lays, 12 vbles, 1 cells thick
   NetCDF ID:       28  opened as READONLY
   Starting date and time  2018163:000000 (0:00:00 June 12, 2018)
   Timestep                         010000 (1:00:00 hh:mm:ss)
   Maximum current record number    121
   Checking header data for file: MET_BDY_3D

   "MET_DOT_3D" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/mcip//METDOT3D_2018163"
   File type GRDDED3
   Execution ID "mcip"
   Grid name "METDOT_CN1SC_188"
   Dimensions: 189 rows, 189 cols, 26 lays, 6 vbles
   NetCDF ID:       29  opened as READONLY
   Starting date and time  2018163:000000 (0:00:00 June 12, 2018)
   Timestep                         010000 (1:00:00 hh:mm:ss)
   Maximum current record number    121
   Checking header data for file: MET_DOT_3D

   "MET_CRO_2D" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/mcip//METCRO2D_2018163"
   File type GRDDED3
   Execution ID "mcip"
   Grid name "METCRO_CN1SC_188"
   Dimensions: 188 rows, 188 cols, 1 lays, 34 vbles
   NetCDF ID:       30  opened as READONLY
   Starting date and time  2018163:000000 (0:00:00 June 12, 2018)
   Timestep                         010000 (1:00:00 hh:mm:ss)
   Maximum current record number    121
   Checking header data for file: MET_CRO_2D
   Checking header data for file: MET_CRO_3D
   Checking header data for file: CTM_CONC_1
   CTM_DRY_DEP_1 :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.DRYDEP.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_WET_DEP_1 :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.WETDEP1.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_WET_DEP_2 :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.WETDEP2.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_SSEMIS_1 :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.SSEMIS.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_DUST_EMIS_1 :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.DUSTEMIS.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_VIS_1    :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.AEROVIS.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_DIAM_1    :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.AERODIAM.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   Checking header data for file: CTM_IPR_1
   Starting time not on file
   CTM_IPR_2    :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.PA_2.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_IPR_3    :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.PA_3.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_IRR_1    :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.IRR_1.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_IRR_2    :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.IRR_2.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_IRR_3    :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.IRR_3.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   A_CONC_1       :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.ACONC.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   S_CGRID       :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.CGRID.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   Checking header data for file: INIT_GASC_1

   "BNDY_GASC_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/bcon/BCON_V5g_CN1SC_188X188_profile"
   File type BNDARY3
   Execution ID "BCON_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 26 lays, 78 vbles, 1 cells thick
   NetCDF ID:       31  opened as READONLY
   Time-independent data.
   Checking header data for file: BNDY_GASC_1
   Checking header data for file: INIT_AERO_1

   "BNDY_AERO_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/bcon/BCON_V5g_CN1SC_188X188_profile"
   File type BNDARY3
   Execution ID "BCON_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 26 lays, 78 vbles, 1 cells thick
   NetCDF ID:       32  opened as READONLY
   Time-independent data.
   Checking header data for file: BNDY_AERO_1
   Checking header data for file: INIT_NONR_1

   "BNDY_NONR_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/bcon/BCON_V5g_CN1SC_188X188_profile"
   File type BNDARY3
   Execution ID "BCON_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 26 lays, 78 vbles, 1 cells thick
   NetCDF ID:       33  opened as READONLY
   Time-independent data.
   Checking header data for file: BNDY_NONR_1

   "INIT_TRAC_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/icon/ICON_V5g_CN1SC_188X188_profile"
   File type GRDDED3
   Execution ID "ICON_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 26 lays, 78 vbles
   NetCDF ID:       34  opened as READONLY
   Time-independent data.
   Checking header data for file: INIT_TRAC_1

   "BNDY_TRAC_1" opened as OLD:READ-ONLY
   File name "/home/16yiny/CMAQ2/cmaq/CMAQ/CMAQv5.0.1/data/bcon/BCON_V5g_CN1SC_188X188_profile"
   File type BNDARY3
   Execution ID "BCON_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 26 lays, 78 vbles, 1 cells thick
   NetCDF ID:       35  opened as READONLY
   Time-independent data.
   Checking header data for file: BNDY_TRAC_1
   DEPV_TRAC_1    :DEPV_TRAC_1

   >>--->> WARNING in subroutine OPEN3
   File not available.

   EMIS_TRAC_1    :EMIS_TRAC_1

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_DEPV_DIAG :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.DEPV.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_PT3D_DIAG :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.PT3D.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_RJ_1       :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.PHOTDIAG1.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_RJ_2       :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.PHOTDIAG2.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   INIT_MEDC_1    :INIT_MEDC_1

   >>--->> WARNING in subroutine OPEN3
   File not available.

   MEDIA_CONC    :MEDIA_CONC

   >>--->> WARNING in subroutine OPEN3
   File not available.

   REGIONS_1    :REGIONS_1

   >>--->> WARNING in subroutine OPEN3
   File not available.

   EMIS_A       :EMIS_A

   >>--->> WARNING in subroutine OPEN3
   File not available.

   EMIS_B       :EMIS_B

   >>--->> WARNING in subroutine OPEN3
   File not available.

   EMIS_M       :EMIS_M

   >>--->> WARNING in subroutine OPEN3
   File not available.

   EMIS_P       :EMIS_P

   >>--->> WARNING in subroutine OPEN3
   File not available.

   EMIS_N       :EMIS_N

   >>--->> WARNING in subroutine OPEN3
   File not available.

   INIT_GASC_S    :INIT_GASC_S

   >>--->> WARNING in subroutine OPEN3
   File not available.

   INIT_AERO_S    :INIT_AERO_S

   >>--->> WARNING in subroutine OPEN3
   File not available.

   INIT_NONR_S    :INIT_NONR_S

   >>--->> WARNING in subroutine OPEN3
   File not available.

   BNDY_GASC_S    :BNDY_GASC_S

   >>--->> WARNING in subroutine OPEN3
   File not available.

   BNDY_AERO_S    :BNDY_AERO_S

   >>--->> WARNING in subroutine OPEN3
   File not available.

   BNDY_NONR_S    :BNDY_NONR_S

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_SENS_1    :CTM_SENS_1

   >>--->> WARNING in subroutine OPEN3
   File not available.

   A_SENS_1       :A_SENS_1

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_SWETDEP_1 :CTM_SWETDEP_1

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_SDRYDEP_1 :CTM_SDRYDEP_1

   >>--->> WARNING in subroutine OPEN3
   File not available.

   DUST_LU_1    :DUST_LU_1

   >>--->> WARNING in subroutine OPEN3
   File not available.

   DUST_LU_2    :DUST_LU_2

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_DEPV_MOS :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.DEPVMOS.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_DRY_DEP_MOS :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.DDMOS.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_DRY_DEP_FST :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.DDFST.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_DEPV_FST :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.DEPVFST.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   E2C_FERT       :E2C_FERT

   >>--->> WARNING in subroutine OPEN3
   File not available.

   E2C_SOIL       :E2C_SOIL

   >>--->> WARNING in subroutine OPEN3
   File not available.

   BELD4_LU       :BELD4_LU

   >>--->> WARNING in subroutine OPEN3
   File not available.

   CTM_SD_TS    :CTM_SD_TS

   >>--->> WARNING in subroutine OPEN3
   File not available.


   >>--->> WARNING in subroutine FLCHECK on PE 000
   Inconsistent header data on input files
   M3WARN:  DTBUF 0:00:00 June 12, 2018 (2018163:000000)

   = = = = = = = = = = = = = =  End  FLCHECK = = = = = = = = = = = = = =

   Value for CTM_MAXSYNC not defined; returning default:  720
   Maximum Synchronization Time Step (sec)
   Value for CTM_MINSYNC not defined; returning default:  60
   Minimum Synchronization Time Step (sec)
   Value for CTM_ADV_CFL not defined; returning default :  0.75
   Maximum CFL number allowed
   Value for SIGMA_SYNC_TOP not defined; returning default :  0.7
   Minimum layer limit for which adv = sync
   Value for ADV_HDIV_LIM not defined; returning default :  0.9
   Maximum horiz. div. limit for adv step adjustment
   Top layer thru which sync step determined: 17

   From ADVSTEP - date/time:  2018163/000000

   Computed synchronization step (HHMMSS): 000115
   Number of Synchronization steps: 48

   Layer Advection per Sync
         Step (HHMMSS)  Step
   26    000025    3
   25    000015    5
   24    000015    5
   23    000015    5
   22    000015    5
   21    000025    3
   20    000025    3
   19    000025    3
   18    000025    3
   17    000115    1
   16    000115    1
   15    000115    1
   14    000115    1
   13    000115    1
   12    000115    1
   11    000115    1
   10    000115    1
      9    000115    1
      8    000115    1
      7    000115    1
      6    000115    1
      5    000115    1
      4    000115    1
      3    000115    1
      2    000115    1
      1    000115    1
   Value for CTM_CKSUM not defined;returning default: TRUE
   Cksum on flag
   Environment variable not set ... Using default:                                        0
   Value for CTM_ILDEPV:  Y returning TRUE
   Value for CTM_ABFLUX:  N returning FALSE
   Value for CTM_SFC_HONO:  Y returning TRUE
   Value for CTM_MOSAIC:  N returning FALSE
   Value for CTM_DEPV_FILE:  N returning FALSE
   Flag for writing the DEPV diagnostic file
   DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE
   DEPV_INIT: completed INIT_GAS_DV block

   CTM_DRY_DEP_1 :/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.DRYDEP.CN1SC_188X188_20180612

   >>--->> WARNING in subroutine OPEN3
   File not available.

   Could not open CTM_DRY_DEP_1 file for update - try to open new

   "CTM_DRY_DEP_1" opened as NEW(READ-WRITE )
   File name "/home/public2/16yinyi/CMAQ2/CCTM_V5g_Linux2_x86_64pgf.DRYDEP.CN1SC_188X188_20180612"
   File type GRDDED3
   Execution ID "CCTM_V5g_Linux2_x86_64pgf"
   Grid name "CN1SC_188X188"
   Dimensions: 188 rows, 188 cols, 1 lays, 79 vbles
   NetCDF ID:       36  opened as VOLATILE READWRITE
   Starting date and time  2018163:010000 (1:00:00 June 12, 2018)
   Timestep                         010000 (1:00:00 hh:mm:ss)
   Maximum current record number       0
   Value for CTM_BIOGEMIS not defined;returning default: FALSE
   Flag for in-line biogenic emissions
   Environment variable not set ... Using default:                                                                               0

   >>--->> WARNING in subroutine OPEMIS on PE 000
   Emissions species CL2 not found on EMIS_1
   M3WARN:  DTBUF 0:00:00 June 12, 2018 (2018163:000000)

   >>--->> WARNING in subroutine OPEMIS on PE 000
   Emissions species HCL not found on EMIS_1
   M3WARN:  DTBUF 0:00:00 June 12, 2018 (2018163:000000)

   >>--->> WARNING in subroutine OPEMIS on PE 000
   Emissions species SESQ not found on EMIS_1
   M3WARN:  DTBUF 0:00:00 June 12, 2018 (2018163:000000)

      Gas Chemistry Emissions Processing in Vertical diffusion ...

      Non-reactives Emissions Processing in Vertical diffusion ...
   Value for CTM_EMLAYS not defined; returning default:  26
   Number of emission layers
   Environment variable not set or empty ... Using default:                                                                      0

      Number of Emissions Layers:       26
      out of total Number of Model Layers: 26
   Value for CTM_STDATE:  2018163
   Value for CTM_STTIME:  0
   Value for CTM_RUNLEN:  240000
   Value for CTM_LTNG_NO:  F returning FALSE

   Aerosol Emissions Processing in Vertical diffusion ...
   --- Aero Species Mapped ---
   --- PM Emis Species Mapped ---

   >>--->> WARNING in subroutine xtract_precursor on PE 000
   Species ALK5RXN in precursor name is not in GC_G2AE or NR_N2AE tables

   --- Precursor Species Mapped ---
   Value for CTM_SSEMDIAG not defined;returning default: FALSE
   Flag for writing the sea-salt-emission diagnostic file
   Environment variable not set ... Using default:                                                       0
   Value for CTM_WB_DUST:  F returning FALSE
=== aerospc em_map
            1          2 ASO4J                      1
            2          2 ANO3J                      4
            3          2 ACLJ                      34
            4          2 ANH4J                      3
            5          2 ANAJ                      32
            6          2 AMGJ                      19
            7          2 AKJ                      20
            8          2 ACAJ                      18
            9          1 APOCI                      7
            9          2 APOCJ                      6
         10          1 APNCOMI                   9
         10          2 APNCOMJ                   8
         11          1 AECI                      11
         11          2 AECJ                      10
         12          2 AFEJ                      14
         13          2 AALJ                      15
         14          2 ASIJ                      16
         15          2 ATIJ                      17
         16          2 AMNJ                      21
         17          2 AH2OJ                   30
         18          2 AOTHRJ                   12
         39          3 ACORS                   22
modified aerospc em_fac
   Value for CTM_PT3DEMIS:  Y returning TRUE
   Using in-line 3d point source emissions option
   Value for IPVERT not defined; returning default:  0
   Value for NPTGRPS:  0
   Value for PT3DDIAG not defined;returning default: FALSE
   Value for PT3DFRAC not defined;returning default: FALSE
   Value for REP_LAYER_MIN not defined; returning default:  -1
   Value for LAYP_STDATE:  2018163
   Value for LAYP_STTIME:  0
   Value for LAYP_NSTEPS:  240000

   Value for PROMPTFLAG:  F returning FALSE
   NOTE: The number of emission layers is    26 , and the maximum
      possible layers is    26

===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 22283 RUNNING AT login
= EXIT CODE: 139
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
32.991u 38.961s 0:09.30 773.6% 0+0k 16+1427376io 1pf+0w
2019年 03月 15日星期五 16:18:45 CST

oooooo · 发表于 2019-4-17 11:23:17

dousha12321 发表于 2019-3-15 16:32
前辈能不能帮我看下之前能转出结果气象数据和海洋数据没问题 Input data path, M3DATA set to /hom ...

麻烦问一下，你的wrfout，mcip，icon和bcon的层数设置都是26吗？

dousha12321 · 发表于 2019-5-4 21:47:24

oooooo 发表于 2019-4-17 11:23
麻烦问一下，你的wrfout，mcip，icon和bcon的层数设置都是26吗？

恩恩是的我的问题应该是服务器不够用把层数减少或者网格变少就能跑了

oooooo · 发表于 2019-5-5 20:01:19

dousha12321 发表于 2019-5-4 21:47
恩恩是的我的问题应该是服务器不够用把层数减少或者网格变少就能跑了

好的，谢谢你

fishbone · 发表于 2019-6-14 14:27:46

楼主问题解决了嘛

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